Can SCEVAN draw a phylogenetic tree deduced from clonal structure of different samples from a patient? like Figure 6 from SCEVAN paper

How does SCEVAN infer phylogenetic trees based on sample subclonal structure? Can you provide the relevant code?

<img width="871" height="774" alt="Image" src="https://github.com/user-attachments/assets/0288710f-441a-43c7-8fa9-217f8f53a8d6" />