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added read record with position #503

added read record with position

added read record with position #503

Triggered via push December 17, 2025 14:36
Status Failure
Total duration 2m 18s
Artifacts

rust.yml

on: push
Matrix: build
Matrix: Formatting
Matrix: Linting
Matrix: sample_run
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6 errors and 20 warnings
Formatting (ubuntu-latest)
Process completed with exit code 1.
Formatting (macos-latest)
The strategy configuration was canceled because "Formatting.ubuntu-latest" failed
Formatting (macos-latest)
Process completed with exit code 1.
sample_run (ubuntu-latest)
Process completed with exit code 8.
sample_run (macos-latest)
The strategy configuration was canceled because "sample_run.ubuntu-latest" failed
sample_run (macos-latest)
The operation was canceled.
unused variable: `parent`: src/quant.rs#L1328
warning: unused variable: `parent` --> src/quant.rs:1328:9 | 1328 | let parent = std::path::Path::new(quant_opts.input_dir); | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_parent`
unused variable: `i_dir`: src/cellfilter.rs#L687
warning: unused variable: `i_dir` --> src/cellfilter.rs:687:9 | 687 | let i_dir = std::path::Path::new(&rad_dir); | ^^^^^ help: if this is intentional, prefix it with an underscore: `_i_dir` | = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
unused import: `TagDesc`: src/utils.rs#L25
warning: unused import: `TagDesc` --> src/utils.rs:25:28 | 25 | use libradicl::rad_types::{TagDesc, TagMap}; | ^^^^^^^
unused import: `RadHeader`: src/utils.rs#L24
warning: unused import: `RadHeader` --> src/utils.rs:24:37 | 24 | use libradicl::header::{RadPrelude, RadHeader}; | ^^^^^^^^^
unused imports: `AlevinFryReadRecordT`, `AlevinFryReadRecordWithPositionT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`: src/quant.rs#L33
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryReadRecordWithPositionT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT` --> src/quant.rs:33:79 | 33 | use libradicl::record::{AlevinFryReadRecord, AlevinFryReadRecordWithPosition, AlevinFryReadRecordWithPositionT, AlevinFryReadRecordT, Con... | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^ 34 | MappedRecord, CollatableMappedRecord, KnownSize, UmiTaggedRecord, 35 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord, | ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^
unused imports: `RadType` and `self`: src/quant.rs#L32
warning: unused imports: `RadType` and `self` --> src/quant.rs:32:28 | 32 | use libradicl::rad_types::{self, RadType, TagMap}; | ^^^^ ^^^^^^^
unused import: `libradicl::chunk`: src/quant.rs#L31
warning: unused import: `libradicl::chunk` --> src/quant.rs:31:5 | 31 | use libradicl::chunk; | ^^^^^^^^^^^^^^^^
unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, `ScLongReadRecordT`, and `ScLongReadRecord`: src/pugutils.rs#L24
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, `ScLongReadRecordT`, and `ScLongReadRecord` --> src/pugutils.rs:24:25 | 24 | use libradicl::record::{AlevinFryReadRecordT, ConvertiblePrimitiveInteger, | ^^^^^^^^^^^^^^^^^^^^ 25 | MappedRecord, CollatableMappedRecord, KnownSize, UmiTaggedRecord, 26 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord | ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^
unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`: src/cellfilter.rs#L27
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT` --> src/cellfilter.rs:27:25 | 27 | use libradicl::record::{AlevinFryReadRecordT, AlevinFryReadRecordWithPosition, ConvertiblePrimitiveInteger, | ^^^^^^^^^^^^^^^^^^^^ 28 | MappedRecord, CollatableMappedRecord, KnownSize, 29 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord | ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^ | = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
Linting (ubuntu-latest)
Unexpected input(s) 'token', valid inputs are ['toolchain', 'args', 'use-cross']
unused variable: `parent`: src/quant.rs#L1328
warning: unused variable: `parent` --> src/quant.rs:1328:9 | 1328 | let parent = std::path::Path::new(quant_opts.input_dir); | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_parent`
unused variable: `i_dir`: src/cellfilter.rs#L687
warning: unused variable: `i_dir` --> src/cellfilter.rs:687:9 | 687 | let i_dir = std::path::Path::new(&rad_dir); | ^^^^^ help: if this is intentional, prefix it with an underscore: `_i_dir` | = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
unused import: `TagDesc`: src/utils.rs#L25
warning: unused import: `TagDesc` --> src/utils.rs:25:28 | 25 | use libradicl::rad_types::{TagDesc, TagMap}; | ^^^^^^^
unused import: `RadHeader`: src/utils.rs#L24
warning: unused import: `RadHeader` --> src/utils.rs:24:37 | 24 | use libradicl::header::{RadPrelude, RadHeader}; | ^^^^^^^^^
unused imports: `AlevinFryReadRecordT`, `AlevinFryReadRecordWithPositionT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`: src/quant.rs#L33
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryReadRecordWithPositionT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT` --> src/quant.rs:33:79 | 33 | use libradicl::record::{AlevinFryReadRecord, AlevinFryReadRecordWithPosition, AlevinFryReadRecordWithPositionT, AlevinFryReadRecordT, Con... | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^ 34 | MappedRecord, CollatableMappedRecord, KnownSize, UmiTaggedRecord, 35 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord, | ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^
unused imports: `RadType` and `self`: src/quant.rs#L32
warning: unused imports: `RadType` and `self` --> src/quant.rs:32:28 | 32 | use libradicl::rad_types::{self, RadType, TagMap}; | ^^^^ ^^^^^^^
unused import: `libradicl::chunk`: src/quant.rs#L31
warning: unused import: `libradicl::chunk` --> src/quant.rs:31:5 | 31 | use libradicl::chunk; | ^^^^^^^^^^^^^^^^
unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, `ScLongReadRecordT`, and `ScLongReadRecord`: src/pugutils.rs#L24
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, `ScLongReadRecordT`, and `ScLongReadRecord` --> src/pugutils.rs:24:25 | 24 | use libradicl::record::{AlevinFryReadRecordT, ConvertiblePrimitiveInteger, | ^^^^^^^^^^^^^^^^^^^^ 25 | MappedRecord, CollatableMappedRecord, KnownSize, UmiTaggedRecord, 26 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord | ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^
unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`: src/cellfilter.rs#L27
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT` --> src/cellfilter.rs:27:25 | 27 | use libradicl::record::{AlevinFryReadRecordT, AlevinFryReadRecordWithPosition, ConvertiblePrimitiveInteger, | ^^^^^^^^^^^^^^^^^^^^ 28 | MappedRecord, CollatableMappedRecord, KnownSize, 29 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord | ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^ | = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
Linting (macos-latest)
Unexpected input(s) 'token', valid inputs are ['toolchain', 'args', 'use-cross']