added read record with position #503
rust.yml
on: push
Matrix: build
Matrix: Formatting
Matrix: Linting
Matrix: sample_run
Annotations
6 errors and 20 warnings
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Formatting (ubuntu-latest)
Process completed with exit code 1.
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Formatting (macos-latest)
The strategy configuration was canceled because "Formatting.ubuntu-latest" failed
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Formatting (macos-latest)
Process completed with exit code 1.
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sample_run (ubuntu-latest)
Process completed with exit code 8.
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sample_run (macos-latest)
The strategy configuration was canceled because "sample_run.ubuntu-latest" failed
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sample_run (macos-latest)
The operation was canceled.
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unused variable: `parent`:
src/quant.rs#L1328
warning: unused variable: `parent`
--> src/quant.rs:1328:9
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1328 | let parent = std::path::Path::new(quant_opts.input_dir);
| ^^^^^^ help: if this is intentional, prefix it with an underscore: `_parent`
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unused variable: `i_dir`:
src/cellfilter.rs#L687
warning: unused variable: `i_dir`
--> src/cellfilter.rs:687:9
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687 | let i_dir = std::path::Path::new(&rad_dir);
| ^^^^^ help: if this is intentional, prefix it with an underscore: `_i_dir`
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= note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
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unused import: `TagDesc`:
src/utils.rs#L25
warning: unused import: `TagDesc`
--> src/utils.rs:25:28
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25 | use libradicl::rad_types::{TagDesc, TagMap};
| ^^^^^^^
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unused import: `RadHeader`:
src/utils.rs#L24
warning: unused import: `RadHeader`
--> src/utils.rs:24:37
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24 | use libradicl::header::{RadPrelude, RadHeader};
| ^^^^^^^^^
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unused imports: `AlevinFryReadRecordT`, `AlevinFryReadRecordWithPositionT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`:
src/quant.rs#L33
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryReadRecordWithPositionT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`
--> src/quant.rs:33:79
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33 | use libradicl::record::{AlevinFryReadRecord, AlevinFryReadRecordWithPosition, AlevinFryReadRecordWithPositionT, AlevinFryReadRecordT, Con...
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^
34 | MappedRecord, CollatableMappedRecord, KnownSize, UmiTaggedRecord,
35 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord,
| ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^
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unused imports: `RadType` and `self`:
src/quant.rs#L32
warning: unused imports: `RadType` and `self`
--> src/quant.rs:32:28
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32 | use libradicl::rad_types::{self, RadType, TagMap};
| ^^^^ ^^^^^^^
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unused import: `libradicl::chunk`:
src/quant.rs#L31
warning: unused import: `libradicl::chunk`
--> src/quant.rs:31:5
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31 | use libradicl::chunk;
| ^^^^^^^^^^^^^^^^
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unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, `ScLongReadRecordT`, and `ScLongReadRecord`:
src/pugutils.rs#L24
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, `ScLongReadRecordT`, and `ScLongReadRecord`
--> src/pugutils.rs:24:25
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24 | use libradicl::record::{AlevinFryReadRecordT, ConvertiblePrimitiveInteger,
| ^^^^^^^^^^^^^^^^^^^^
25 | MappedRecord, CollatableMappedRecord, KnownSize, UmiTaggedRecord,
26 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord
| ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^
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unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`:
src/cellfilter.rs#L27
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`
--> src/cellfilter.rs:27:25
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27 | use libradicl::record::{AlevinFryReadRecordT, AlevinFryReadRecordWithPosition, ConvertiblePrimitiveInteger,
| ^^^^^^^^^^^^^^^^^^^^
28 | MappedRecord, CollatableMappedRecord, KnownSize,
29 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord
| ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^
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= note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
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Linting (ubuntu-latest)
Unexpected input(s) 'token', valid inputs are ['toolchain', 'args', 'use-cross']
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unused variable: `parent`:
src/quant.rs#L1328
warning: unused variable: `parent`
--> src/quant.rs:1328:9
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1328 | let parent = std::path::Path::new(quant_opts.input_dir);
| ^^^^^^ help: if this is intentional, prefix it with an underscore: `_parent`
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unused variable: `i_dir`:
src/cellfilter.rs#L687
warning: unused variable: `i_dir`
--> src/cellfilter.rs:687:9
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687 | let i_dir = std::path::Path::new(&rad_dir);
| ^^^^^ help: if this is intentional, prefix it with an underscore: `_i_dir`
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= note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
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unused import: `TagDesc`:
src/utils.rs#L25
warning: unused import: `TagDesc`
--> src/utils.rs:25:28
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25 | use libradicl::rad_types::{TagDesc, TagMap};
| ^^^^^^^
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unused import: `RadHeader`:
src/utils.rs#L24
warning: unused import: `RadHeader`
--> src/utils.rs:24:37
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24 | use libradicl::header::{RadPrelude, RadHeader};
| ^^^^^^^^^
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unused imports: `AlevinFryReadRecordT`, `AlevinFryReadRecordWithPositionT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`:
src/quant.rs#L33
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryReadRecordWithPositionT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`
--> src/quant.rs:33:79
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33 | use libradicl::record::{AlevinFryReadRecord, AlevinFryReadRecordWithPosition, AlevinFryReadRecordWithPositionT, AlevinFryReadRecordT, Con...
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^
34 | MappedRecord, CollatableMappedRecord, KnownSize, UmiTaggedRecord,
35 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord,
| ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^
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unused imports: `RadType` and `self`:
src/quant.rs#L32
warning: unused imports: `RadType` and `self`
--> src/quant.rs:32:28
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32 | use libradicl::rad_types::{self, RadType, TagMap};
| ^^^^ ^^^^^^^
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unused import: `libradicl::chunk`:
src/quant.rs#L31
warning: unused import: `libradicl::chunk`
--> src/quant.rs:31:5
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31 | use libradicl::chunk;
| ^^^^^^^^^^^^^^^^
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unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, `ScLongReadRecordT`, and `ScLongReadRecord`:
src/pugutils.rs#L24
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, `ScLongReadRecordT`, and `ScLongReadRecord`
--> src/pugutils.rs:24:25
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24 | use libradicl::record::{AlevinFryReadRecordT, ConvertiblePrimitiveInteger,
| ^^^^^^^^^^^^^^^^^^^^
25 | MappedRecord, CollatableMappedRecord, KnownSize, UmiTaggedRecord,
26 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord
| ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^
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unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`:
src/cellfilter.rs#L27
warning: unused imports: `AlevinFryReadRecordT`, `AlevinFryRecordContext`, `ScLongReadRecordContext`, and `ScLongReadRecordT`
--> src/cellfilter.rs:27:25
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27 | use libradicl::record::{AlevinFryReadRecordT, AlevinFryReadRecordWithPosition, ConvertiblePrimitiveInteger,
| ^^^^^^^^^^^^^^^^^^^^
28 | MappedRecord, CollatableMappedRecord, KnownSize,
29 | AlevinFryRecordContext, RecordContext, ScLongReadRecordContext, ScLongReadRecordT, ScLongReadRecord
| ^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^
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= note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
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Linting (macos-latest)
Unexpected input(s) 'token', valid inputs are ['toolchain', 'args', 'use-cross']
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