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pco.owl
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2257 lines (1332 loc) · 93.4 KB
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/pco.owl#"
xml:base="http://purl.obolibrary.org/obo/pco.owl"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:cito="http://purl.org/spar/cito/"
xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/pco.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/pco/releases/2017-08-16/pco.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2017-07-19/ro.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/iao/2015-02-23/ontology-metadata.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/pco/imports/bfo_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/pco/imports/ncbitaxon_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/pco/imports/pato_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/pco/imports/envo_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/pco/imports/go_import.owl"/>
<rdfs:comment>The Population and Community Ontology (PCO) is licensed under a Creative Commons zero (CC0) license - http://creativecommons.org/publicdomain/zero/1.0/. You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission. We ask that anyone using this ontology follow the standards of the scientific ontology community by re-using ontology identifiers whenever possible and properly citing the ontology and its creators.</rdfs:comment>
<dc:contributor>http://orcid.org/0000-0002-4366-3088</dc:contributor>
<dc:creator>Ramona Walls</dc:creator>
<dc:creator>David Osumi-Sutherland</dc:creator>
<dc:creator>Jie Zheng</dc:creator>
<dc:creator>Pier Luigi Buttigieg</dc:creator>
<dc:license>http://creativecommons.org/publicdomain/zero/1.0/</dc:license>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_created_by -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_created_by"/>
<!-- http://purl.obolibrary.org/obo/IAO_creation_date -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_creation_date"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
<!-- http://purl.obolibrary.org/obo/RO_0000052 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000052"/>
<!-- http://purl.obolibrary.org/obo/RO_0001025 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001025"/>
<!-- http://purl.obolibrary.org/obo/RO_0002350 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002350"/>
<!-- http://purl.obolibrary.org/obo/RO_0002351 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002351"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000001 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000001">
<rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000002 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000003 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000004 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000005 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000005">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000015 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000015">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000016 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000016">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000017 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000019 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000020 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000023">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000029 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000029">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000141"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000031 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000031">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000034 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000034">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000040 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000141 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000141">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0000003 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000006"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0000006 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0000007 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000141"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0000011 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000006"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002577"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0000014 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0000014">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000003"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0001000 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0001000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000003"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0001001 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0001001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0001000"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0001010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0001010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000031"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Material anatomical entity that is a member of an individual species or is a viral or viroid particle.</obo:IAO_0000115>
<obo:IAO_0000589 xml:lang="en">organism or virus</obo:IAO_0000589>
<obo:IAO_created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Melissa Haendel</obo:IAO_created_by>
<obo:IAO_creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">9/18/11</obo:IAO_creation_date>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organism or virus or viroid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CARO_0010000 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0010000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000003"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0010004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0010004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0001010"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An individual member of a clade.</obo:IAO_0000115>
<obo:IAO_0000589 xml:lang="en">organism</obo:IAO_0000589>
<obo:IAO_created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mah</obo:IAO_created_by>
<obo:IAO_creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">7.16.2011</obo:IAO_creation_date>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A general term for organism that is agnostic about single cell vs multi-cellular. Note that this is a subclass of 'anatomical structure', meaning that an organism must be a connected structure. So, if I take one plant and make a rooted cutting from a it, I now have two (clonally related) organisms. </rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organism</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_0000000 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000003"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CL_0000540 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000540">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/ENVO_00000000 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ENVO_00000000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ENVO_01000813"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/ENVO_00000002 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ENVO_00000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ENVO_00000000"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/ENVO_00000070 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ENVO_00000070">
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<!-- http://purl.obolibrary.org/obo/ENVO_00000428 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_00002004 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_00002297 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_00003074 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_00003075 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_00010483 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000010 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000254 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000313 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000637 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000744 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000799 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000804 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000813 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000817 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000951 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000952 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000983 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000993 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000996 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01000998 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01001000 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01001002 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_01001055 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_02500000 -->
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<!-- http://purl.obolibrary.org/obo/ENVO_02500027 -->
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<!-- http://purl.obolibrary.org/obo/GO_0003674 -->
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<!-- http://purl.obolibrary.org/obo/GO_0003824 -->
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<!-- http://purl.obolibrary.org/obo/GO_0004842 -->
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<!-- http://purl.obolibrary.org/obo/GO_0004872 -->
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<!-- http://purl.obolibrary.org/obo/GO_0005634 -->
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<!-- http://purl.obolibrary.org/obo/GO_0007610 -->
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<!-- http://purl.obolibrary.org/obo/GO_0007631 -->
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<!-- http://purl.obolibrary.org/obo/GO_0008150 -->
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<!-- http://purl.obolibrary.org/obo/GO_0016020 -->
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<!-- http://purl.obolibrary.org/obo/GO_0016301 -->
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<!-- http://purl.obolibrary.org/obo/GO_0016740 -->
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<!-- http://purl.obolibrary.org/obo/GO_0016772 -->
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<!-- http://purl.obolibrary.org/obo/GO_0016874 -->
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<!-- http://purl.obolibrary.org/obo/GO_0016879 -->
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<!-- http://purl.obolibrary.org/obo/GO_0016881 -->
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<!-- http://purl.obolibrary.org/obo/GO_0019787 -->
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<!-- http://purl.obolibrary.org/obo/GO_0030424 -->
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<!-- http://purl.obolibrary.org/obo/GO_0042734 -->
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<!-- http://purl.obolibrary.org/obo/GO_0044456 -->
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<!-- http://purl.obolibrary.org/obo/GO_0045202 -->
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<!-- http://purl.obolibrary.org/obo/GO_0051702 -->
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<!-- http://purl.obolibrary.org/obo/GO_0051703 -->
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<!-- http://purl.obolibrary.org/obo/GO_0051704 -->
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<!-- http://purl.obolibrary.org/obo/GO_0051705 -->
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<!-- http://purl.obolibrary.org/obo/GO_0051816 -->
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<!-- http://purl.obolibrary.org/obo/GO_0051850 -->
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