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JERM.owl
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6664 lines (6658 loc) · 273 KB
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<?xml version="1.0"?>
<Ontology xmlns="http://www.w3.org/2002/07/owl#"
xml:base="http://jermontology.org/ontology/JERMOntology"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
ontologyIRI="http://jermontology.org/ontology/JERMOntology">
<Prefix name="" IRI="http://jermontology.org/ontology/JERMOntology"/>
<Prefix name="dc" IRI="http://purl.org/dc/elements/1.1/"/>
<Prefix name="dct" IRI="http://purl.org/dc/terms/"/>
<Prefix name="owl" IRI="http://www.w3.org/2002/07/owl#"/>
<Prefix name="rdf" IRI="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
<Prefix name="xml" IRI="http://www.w3.org/XML/1998/namespace"/>
<Prefix name="xsd" IRI="http://www.w3.org/2001/XMLSchema#"/>
<Prefix name="foaf" IRI="http://xmlns.com/foaf/0.1/"/>
<Prefix name="prov" IRI="http://www.w3.org/ns/prov#"/>
<Prefix name="rdfs" IRI="http://www.w3.org/2000/01/rdf-schema#"/>
<Prefix name="schema" IRI="http://schema.org/"/>
<Prefix name="owl2xml" IRI="http://www.w3.org/2006/12/owl2-xml#"/>
<Prefix name="JERMOntology" IRI="http://jermontology.org/ontology/JERMOntology#"/>
<Prefix name="JERMOntology2" IRI="http://jermontology.org/ontology/JERMOntology#13"/>
<Prefix name="JERMOntology3" IRI="http://jermontology.org/ontology/JERMOntology#2"/>
<Prefix name="JERMOntology4" IRI="http://jermontology.org/ontology/JERMOntology#2-"/>
<Declaration>
<Class IRI="#Metabolomics"/>
</Declaration>
<Declaration>
<DataProperty IRI="#labInternalID"/>
</Declaration>
<Declaration>
<Class IRI="#organism_part"/>
</Declaration>
<Declaration>
<Class IRI="#Metabolic_redesign"/>
</Declaration>
<Declaration>
<Class IRI="#Ion_optics"/>
</Declaration>
<Declaration>
<Class IRI="#Microarray_file_format"/>
</Declaration>
<Declaration>
<Class IRI="#Software"/>
</Declaration>
<Declaration>
<Class IRI="#2D_gel_electrophoresis"/>
</Declaration>
<Declaration>
<DataProperty IRI="#description"/>
</Declaration>
<Declaration>
<Class IRI="#13C_radiolabelling"/>
</Declaration>
<Declaration>
<Class IRI="#Next_generation_sequencing_analysis"/>
</Declaration>
<Declaration>
<Class IRI="#Enzyme"/>
</Declaration>
<Declaration>
<Class IRI="#Gene_expression_profiling"/>
</Declaration>
<Declaration>
<Class IRI="#NMR"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasItem"/>
</Declaration>
<Declaration>
<Class IRI="#Format"/>
</Declaration>
<Declaration>
<Class IRI="#developmentalStage"/>
</Declaration>
<Declaration>
<Class IRI="#Spectrum_interpretation"/>
</Declaration>
<Declaration>
<DataProperty IRI="#sabioRKID"/>
</Declaration>
<Declaration>
<Class IRI="#Organism_or_strain_characterisation"/>
</Declaration>
<Declaration>
<Class IRI="#genotype"/>
</Declaration>
<Declaration>
<Class IRI="#Modelling_analysis"/>
</Declaration>
<Declaration>
<Class IRI="#Proteomics_file_format"/>
</Declaration>
<Declaration>
<Class IRI="#Gene_regulatory_network"/>
</Declaration>
<Declaration>
<Class IRI="#Growth_medium_composition"/>
</Declaration>
<Declaration>
<Class IRI="#Cheminformatics_analysis"/>
</Declaration>
<Declaration>
<Class IRI="#Experimental_factor_type"/>
</Declaration>
<Declaration>
<Class IRI="#Primer_design"/>
</Declaration>
<Declaration>
<Class IRI="#Genotyping"/>
</Declaration>
<Declaration>
<Class IRI="#Biological_entity"/>
</Declaration>
<Declaration>
<Class IRI="#SNP_detection"/>
</Declaration>
<Declaration>
<Class IRI="#SELDI_TOF"/>
</Declaration>
<Declaration>
<Class IRI="#Metabolic_network"/>
</Declaration>
<Declaration>
<Class IRI="#Hybridization"/>
</Declaration>
<Declaration>
<Class IRI="#Concentration"/>
</Declaration>
<Declaration>
<Class IRI="#Gel_filtration"/>
</Declaration>
<Declaration>
<Class IRI="#fermentation"/>
</Declaration>
<Declaration>
<Class IRI="#Publication"/>
</Declaration>
<Declaration>
<DataProperty IRI="#webLink"/>
</Declaration>
<Declaration>
<Class IRI="#SBML_format"/>
</Declaration>
<Declaration>
<Class IRI="#Functional_biological_entity"/>
</Declaration>
<Declaration>
<Class abbreviatedIRI="prov:Entity"/>
</Declaration>
<Declaration>
<Class IRI="#Project"/>
</Declaration>
<Declaration>
<Class IRI="#Signal_transduction"/>
</Declaration>
<Declaration>
<Class IRI="#Next_generation_sequencing"/>
</Declaration>
<Declaration>
<Class IRI="#Ion_trap"/>
</Declaration>
<Declaration>
<DataProperty IRI="#externalSupplierID"/>
</Declaration>
<Declaration>
<Class IRI="#MicroRNA_profiling"/>
</Declaration>
<Declaration>
<Class IRI="#Optical_density_600"/>
</Declaration>
<Declaration>
<Class IRI="#Tiling_array"/>
</Declaration>
<Declaration>
<Class IRI="#respiration"/>
</Declaration>
<Declaration>
<Class IRI="#ElectrosprayIonisation"/>
</Declaration>
<Declaration>
<Class IRI="#Spectrophotometry"/>
</Declaration>
<Declaration>
<Class IRI="#Cell_size"/>
</Declaration>
<Declaration>
<Class IRI="#Ionization_source"/>
</Declaration>
<Declaration>
<Class IRI="#explantation"/>
</Declaration>
<Declaration>
<Class IRI="#Factors_studied"/>
</Declaration>
<Declaration>
<Class IRI="#Data"/>
</Declaration>
<Declaration>
<Class IRI="#Model_execution_environment"/>
</Declaration>
<Declaration>
<Class IRI="#Quantitation"/>
</Declaration>
<Declaration>
<Class IRI="#Ion_mobility_spectrometry_mass_spectrometry"/>
</Declaration>
<Declaration>
<Class IRI="#Metabolism"/>
</Declaration>
<Declaration>
<Class IRI="#Strain"/>
</Declaration>
<Declaration>
<Class IRI="#qRT-PCR"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#isPartOf"/>
</Declaration>
<Declaration>
<Class IRI="#Molecule_labelling"/>
</Declaration>
<Declaration>
<Class IRI="#Organism"/>
</Declaration>
<Declaration>
<Class IRI="#Batch"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#isFormatOf"/>
</Declaration>
<Declaration>
<Class IRI="#Experimental_design_type"/>
</Declaration>
<Declaration>
<Class IRI="#Cultivation_experiment"/>
</Declaration>
<Declaration>
<Class IRI="#Programme"/>
</Declaration>
<Declaration>
<Class IRI="#Structural_methods"/>
</Declaration>
<Declaration>
<Class IRI="#Ordinary_differential_equation"/>
</Declaration>
<Declaration>
<Class IRI="#DNA_sequencing"/>
</Declaration>
<Declaration>
<Class IRI="#electronDonorPhenotype"/>
</Declaration>
<Declaration>
<Class IRI="#Enzyme_activity"/>
</Declaration>
<Declaration>
<Class IRI="#Tiling_path"/>
</Declaration>
<Declaration>
<Class IRI="#2-hybrid_system"/>
</Declaration>
<Declaration>
<Class IRI="#Accelerator_mass_spectrometry"/>
</Declaration>
<Declaration>
<Class IRI="#Time_series"/>
</Declaration>
<Declaration>
<DataProperty IRI="#termsOfDistribution"/>
</Declaration>
<Declaration>
<Class IRI="#Custom_Array"/>
</Declaration>
<Declaration>
<Class IRI="#Post_source_component"/>
</Declaration>
<Declaration>
<Class IRI="#SDS_PAGE"/>
</Declaration>
<Declaration>
<Class IRI="#Gas_chromatography"/>
</Declaration>
<Declaration>
<Class IRI="#Dilution_rate"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#itemProducedBy"/>
</Declaration>
<Declaration>
<Class IRI="#Experimental_assay_type"/>
</Declaration>
<Declaration>
<Class IRI="#Protein-protein_interaction"/>
</Declaration>
<Declaration>
<Class IRI="#Detectors"/>
</Declaration>
<Declaration>
<DataProperty IRI="#donationDate"/>
</Declaration>
<Declaration>
<Class IRI="#Dry_biomass"/>
</Declaration>
<Declaration>
<Class IRI="#Western_blot"/>
</Declaration>
<Declaration>
<Class IRI="#Data_sample"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#isInvestigatedBy"/>
</Declaration>
<Declaration>
<ObjectProperty abbreviatedIRI="prov:wasAttributedTo"/>
</Declaration>
<Declaration>
<DataProperty IRI="#DOI"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#usesTechnology"/>
</Declaration>
<Declaration>
<Class IRI="#Measured_item"/>
</Declaration>
<Declaration>
<Class IRI="#Interactomics"/>
</Declaration>
<Declaration>
<Class IRI="#ChIP-on-chip"/>
</Declaration>
<Declaration>
<Class IRI="#Liquid_chromatography-tandem_mass_spectrometry"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasCreator"/>
</Declaration>
<Declaration>
<Class IRI="#Linear_equation"/>
</Declaration>
<Declaration>
<Class IRI="#Enzymatic_assay"/>
</Declaration>
<Declaration>
<Class IRI="#Gel_electrophoresis"/>
</Declaration>
<Declaration>
<DataProperty IRI="#units"/>
</Declaration>
<Declaration>
<Class IRI="#Protein_expression_profiling"/>
</Declaration>
<Declaration>
<Class IRI="#Fluxomics"/>
</Declaration>
<Declaration>
<Class IRI="#Protein-protein_interaction_profiling"/>
</Declaration>
<Declaration>
<AnnotationProperty abbreviatedIRI="dc:identifier"/>
</Declaration>
<Declaration>
<Class IRI="#Cell_cycle"/>
</Declaration>
<Declaration>
<Class IRI="#Post_translational_modification"/>
</Declaration>
<Declaration>
<Class IRI="#Translational_profiling"/>
</Declaration>
<Declaration>
<Class IRI="#deletion"/>
</Declaration>
<Declaration>
<Class IRI="#semi-aerobic"/>
</Declaration>
<Declaration>
<Class IRI="#Protein_quantification"/>
</Declaration>
<Declaration>
<Class IRI="#Protein_structural_analysis"/>
</Declaration>
<Declaration>
<Class IRI="#turbidostat"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#isContributorOf"/>
</Declaration>
<Declaration>
<Class IRI="#Model_analysis_type"/>
</Declaration>
<Declaration>
<Class IRI="#cell"/>
</Declaration>
<Declaration>
<Class IRI="#Label"/>
</Declaration>
<Declaration>
<Class IRI="#Electron_scanning_microscopy"/>
</Declaration>
<Declaration>
<Class IRI="#Immune_precipitation"/>
</Declaration>
<Declaration>
<Class IRI="#FT-ICR"/>
</Declaration>
<Declaration>
<Class IRI="#Tandem_mass_spectrometry"/>
</Declaration>
<Declaration>
<Class IRI="#Characteristics_for_assay"/>
</Declaration>
<Declaration>
<Class IRI="#Electrophoresis"/>
</Declaration>
<Declaration>
<Class IRI="#Protein_identification"/>
</Declaration>
<Declaration>
<Class IRI="#Initial_rate_experiment"/>
</Declaration>
<Declaration>
<Class IRI="#Proteomics"/>
</Declaration>
<Declaration>
<Class IRI="#Liquid_chromatography_mass_spectrometry"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#isDerivedFrom"/>
</Declaration>
<Declaration>
<Class IRI="#miRNA_microarray"/>
</Declaration>
<Declaration>
<Class IRI="#biofilm"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasCharacteristics"/>
</Declaration>
<Declaration>
<Class IRI="#Optical_density"/>
</Declaration>
<Declaration>
<DataProperty IRI="#ageOfSpecimen"/>
</Declaration>
<Declaration>
<Class IRI="#Information_entity"/>
</Declaration>
<Declaration>
<Class IRI="#Volume"/>
</Declaration>
<Declaration>
<DataProperty IRI="#dateOfDeath"/>
</Declaration>
<Declaration>
<DataProperty IRI="#title"/>
</Declaration>
<Declaration>
<Class IRI="#insertion"/>
</Declaration>
<Declaration>
<Class IRI="#ploidy"/>
</Declaration>
<Declaration>
<Class IRI="#Comparative_genomics"/>
</Declaration>
<Declaration>
<Class IRI="#heteroCarbonSource"/>
</Declaration>
<Declaration>
<Class IRI="#Mass_spectrometry"/>
</Declaration>
<Declaration>
<Class IRI="#Microarray_factors"/>
</Declaration>
<Declaration>
<Class IRI="#Discontinuous_enzymatic"/>
</Declaration>
<Declaration>
<Class IRI="#MALDI_TOF"/>
</Declaration>
<Declaration>
<Class IRI="#DNA_Methylation"/>
</Declaration>
<Declaration>
<Class IRI="#Sample_preparation_protocol"/>
</Declaration>
<Declaration>
<Class IRI="#Sex/Gender"/>
</Declaration>
<Declaration>
<Class IRI="#Asset"/>
</Declaration>
<Declaration>
<Class IRI="#Sequencing"/>
</Declaration>
<Declaration>
<Class IRI="#Bioinformatics_analysis"/>
</Declaration>
<Declaration>
<Class IRI="#energySourcePhenotype"/>
</Declaration>
<Declaration>
<Class IRI="#Catabolic_response"/>
</Declaration>
<Declaration>
<Class IRI="#RNA-seq_profiling"/>
</Declaration>
<Declaration>
<Class IRI="#Radioactive_labelling"/>
</Declaration>
<Declaration>
<Class IRI="#carbonSourcePhenotype"/>
</Declaration>
<Declaration>
<Class IRI="#Flow_cytometry"/>
</Declaration>
<Declaration>
<Class IRI="#Instrument"/>
</Declaration>
<Declaration>
<Class IRI="#CultureGrowthType"/>
</Declaration>
<Declaration>
<Class IRI="#Data_file_format"/>
</Declaration>
<Declaration>
<Class IRI="#Informatics_analysis"/>
</Declaration>
<Declaration>
<Class IRI="#Limited_media_growth"/>
</Declaration>
<Declaration>
<Class IRI="#Quality_control_type"/>
</Declaration>
<Declaration>
<Class IRI="#Surface_plasmon_resonance"/>
</Declaration>
<Declaration>
<Class IRI="#Micro-electrophoresis"/>
</Declaration>
<Declaration>
<Class IRI="#RNA-Seq"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasOutput"/>
</Declaration>
<Declaration>
<Class IRI="#Proteomics_factors"/>
</Declaration>
<Declaration>
<Class IRI="#Intracellular_metabolite_Concentration"/>
</Declaration>
<Declaration>
<DataProperty IRI="#timepoint"/>
</Declaration>
<Declaration>
<DataProperty IRI="#ECNumber"/>
</Declaration>
<Declaration>
<Class IRI="#Inductively_coupled_plasma_mass_spectrometry"/>
</Declaration>
<Declaration>
<Class IRI="#Buffer"/>
</Declaration>
<Declaration>
<Class IRI="#organoElectronDonor"/>
</Declaration>
<Declaration>
<Class IRI="#Translation"/>
</Declaration>
<Declaration>
<Class IRI="#Growth_rate"/>
</Declaration>
<Declaration>
<Class IRI="#informatics_analysis_type"/>
</Declaration>
<Declaration>
<Class IRI="#Cell_count"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#isAssociatedWith"/>
</Declaration>
<Declaration>
<Class IRI="#SBML_model"/>
</Declaration>
<Declaration>
<Class IRI="#By-product_formation"/>
</Declaration>
<Declaration>
<Class IRI="#Enzymology"/>
</Declaration>
<Declaration>
<Class IRI="#Flux_balance_analysis"/>
</Declaration>
<Declaration>
<DataProperty IRI="#identifier"/>
</Declaration>
<Declaration>
<DataProperty IRI="#instrumentModel"/>
</Declaration>
<Declaration>
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<Class IRI="#Extracellular_metabolite_concentration"/>
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<Declaration>
<Class IRI="#FACS"/>
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<Declaration>
<Class IRI="#qPCR"/>
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<ObjectProperty abbreviatedIRI="prov:wasDerivedFrom"/>
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<Class IRI="#Pressure"/>
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<DataProperty IRI="#manufacturer"/>
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<Declaration>
<Class IRI="#Microarray"/>
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<Declaration>
<Class IRI="#Immuno_electron_microscopy"/>
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<Declaration>
<Class IRI="#mutationType"/>
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<Declaration>
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<Declaration>
<Class IRI="#MALDI"/>
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<Class IRI="#Model_format"/>
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<Class IRI="#Material_entity"/>
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<Declaration>
<Class IRI="#Experimental_assay"/>
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<Declaration>
<Class IRI="#Chip-Seq"/>
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<Declaration>
<DataProperty IRI="#samplingDate"/>
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<Declaration>
<Class IRI="#hexaploid"/>
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<Class IRI="#Enzymatic_activity_measurements"/>
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<Declaration>
<Class IRI="#Comparative_genomic_hybridization"/>
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<Declaration>
<Class IRI="#Equipment"/>
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<Declaration>
<Class IRI="#Simulation_data"/>
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<Declaration>
<DataProperty IRI="#seekID"/>
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<Declaration>
<Class IRI="#Continuous_enzymatic"/>
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<ObjectProperty IRI="#isCreatorOf"/>
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<Declaration>
<Class IRI="#pH"/>
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<Class IRI="#Imaging"/>
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<Declaration>
<Class IRI="#cell_type"/>
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<Class IRI="#Replicate_type"/>
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<Class IRI="#Activity"/>
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<Declaration>
<Class IRI="#Glucose_pulse"/>
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<Declaration>
<Class IRI="#Stress_response"/>
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<Declaration>
<Class IRI="#Methylation_profiling"/>
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<Class IRI="#Time_of_flight_drift_tube"/>
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<Class abbreviatedIRI="prov:Activity"/>
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<Class IRI="#Pathway"/>
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<Class IRI="#PCR"/>
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<Class IRI="#Cell_line"/>
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<Class abbreviatedIRI="owl:Thing"/>
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<Class IRI="#Post-translational_modification"/>
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<Declaration>
<Class IRI="#Single_Nucleotide_Polymorphism"/>
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<Class IRI="#SOP"/>
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<Class IRI="#Isotope_ratio_mass_spectrometry"/>
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<Declaration>
<Class IRI="#Metabonomics"/>
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<Class IRI="#Gas_flow"/>
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<Declaration>
<Class IRI="#Assay"/>
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<Declaration>
<Class IRI="#Genome-scale_enzyme_activity_profiling"/>
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<Class IRI="#Genome"/>
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<Class IRI="#CellML"/>
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<Declaration>
<Class IRI="#16S_rRNA"/>
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<Declaration>
<Class IRI="#Orbitrap_velos"/>
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<Declaration>
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<Class IRI="#Reactomics"/>
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<Class IRI="#process"/>
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<Declaration>
<Class IRI="#Metabolite"/>
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<Class IRI="#Binding"/>
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<Declaration>
<Class IRI="#Immunoassay"/>
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<Declaration>
<ObjectProperty IRI="#hasFormat"/>
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<Declaration>
<DataProperty IRI="#pubmedID"/>
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<Declaration>
<Class IRI="#RNAi"/>
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<Declaration>
<Class IRI="#MAGEML"/>
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<Declaration>
<Class IRI="#Gene"/>
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<Declaration>
<Class IRI="#Mass_spec_file_format"/>
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<Declaration>
<Class IRI="#Inoculation_density"/>
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<Declaration>
<Class IRI="#Metabolite_concentration"/>
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<DataProperty IRI="#version"/>
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<Declaration>
<Class IRI="#FRAP"/>
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<Declaration>
<Class IRI="#Specific_concentration"/>
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<Declaration>
<Class IRI="#Metagenomics"/>
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<Declaration>
<Class IRI="#anaerobic"/>
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<Class IRI="#Model"/>
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<Declaration>
<Class IRI="#Expression"/>
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<Declaration>
<Class IRI="#Bait_protein_tagging"/>
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<Class IRI="#aerobic"/>
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<Declaration>
<Class IRI="#Normalization_method"/>
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<Declaration>
<Class IRI="#chemoenergy"/>
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<Declaration>
<Class IRI="#Genome_wide_association"/>
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<Declaration>
<Class IRI="#Cell_growth_rate"/>
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<Declaration>
<ObjectProperty IRI="#isTypeOf"/>
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<Declaration>
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<Declaration>
<ObjectProperty IRI="#investigates"/>
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<ObjectProperty IRI="#hasInput"/>
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<Declaration>
<Class IRI="#Genomics"/>
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<Declaration>
<Class IRI="#Characteristics_for_sample"/>
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<Declaration>
<Class IRI="#Extracellular_concentration"/>
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<Declaration>
<Class IRI="#photoEnergy"/>
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<Declaration>
<Class IRI="#Expression_value_measurement_type"/>
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<Declaration>
<Class IRI="#Collision_cell"/>
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<Declaration>
<Class IRI="#Progressive_curve_experiment"/>
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<Declaration>
<Class IRI="#Substrate_utilization"/>
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<Declaration>
<Class IRI="#SNP_array"/>
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<Declaration>
<Class IRI="#Technology_type"/>
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<Declaration>
<Class IRI="#Cell_growth_optimisation"/>
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<Declaration>
<AnnotationProperty abbreviatedIRI="dc:description"/>
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<Declaration>
<Class IRI="#Genome_scale"/>
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<Declaration>
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<Declaration>
<Class IRI="#Protocol"/>
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<Declaration>
<Class IRI="#Partial_differential_equation"/>
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<Declaration>
<Class IRI="#Person"/>
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<ObjectProperty IRI="#hasContributor"/>
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<Declaration>
<DataProperty IRI="#NCBI_ID"/>
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<Declaration>
<Class IRI="#treatment"/>
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<Declaration>
<Class IRI="#HPLC"/>
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<Declaration>
<Class IRI="#Intracellular_concentration"/>
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<Declaration>
<DataProperty IRI="#sequenceAccession"/>
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<Declaration>
<Class IRI="#Protein"/>
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<Declaration>
<Class IRI="#Sample"/>
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<Declaration>
<Class IRI="#UPLC"/>
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<Declaration>
<ObjectProperty abbreviatedIRI="prov:wasInfluencedBy"/>
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<Declaration>
<Class IRI="#phenotype"/>
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<Declaration>
<Class IRI="#Gas_chromatography_mass_spectrometry"/>
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<Declaration>
<Class IRI="#Peptide"/>
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<Declaration>
<Class IRI="#diploid"/>
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<Declaration>
<Class IRI="#MAGE-TAB"/>
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<Declaration>
<Class IRI="#Mass"/>
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<Declaration>
<ObjectProperty IRI="#hasPart"/>
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<Declaration>
<Class IRI="#Immunostaining"/>
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<Declaration>
<DataProperty IRI="#reactionCatalyst"/>
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<Declaration>
<Class IRI="#Spectrum_generation"/>
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<Declaration>
<Class IRI="#Amplification"/>
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<Declaration>