codoff/codoff_env_for_multicellularity_and_bgc_expansions_study.yml at main · Kalan-Lab/codoff · GitHub

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name: /workspace/lab/kalanlab/salamzar/multicellularity_and_bgcs/conda_envs/codoff_env_v1.2.3
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - archspec=0.2.5=pyhd8ed1ab_0
  - biopython=1.86=py313h07c4f96_0
  - brotli=1.2.0=h41a2e66_0
  - brotli-bin=1.2.0=hf2c8021_0
  - bzip2=1.0.8=hda65f42_8
  - ca-certificates=2025.10.5=hbd8a1cb_0
  - codoff=1.2.3=pyhdfd78af_0
  - contourpy=1.3.3=py313h7037e92_3
  - cycler=0.12.1=pyhd8ed1ab_1
  - fonttools=4.60.1=py313h3dea7bd_0
  - freetype=2.14.1=ha770c72_0
  - icu=75.1=he02047a_0
  - kiwisolver=1.4.9=py313hc8edb43_2
  - lcms2=2.17=h717163a_0
  - ld_impl_linux-64=2.44=h1aa0949_5
  - lerc=4.0.0=h0aef613_1
  - libblas=3.9.0=38_h4a7cf45_openblas
  - libbrotlicommon=1.2.0=h09219d5_0
  - libbrotlidec=1.2.0=hd53d788_0
  - libbrotlienc=1.2.0=h02bd7ab_0
  - libcblas=3.9.0=38_h0358290_openblas
  - libdeflate=1.25=h17f619e_0
  - libexpat=2.7.1=hecca717_0
  - libffi=3.5.2=h9ec8514_0
  - libfreetype=2.14.1=ha770c72_0
  - libfreetype6=2.14.1=h73754d4_0
  - libgcc=15.2.0=h767d61c_7
  - libgcc-ng=15.2.0=h69a702a_7
  - libgfortran=15.2.0=h69a702a_7
  - libgfortran5=15.2.0=hcd61629_7
  - libgomp=15.2.0=h767d61c_7
  - libjpeg-turbo=3.1.2=hb03c661_0
  - liblapack=3.9.0=38_h47877c9_openblas
  - liblzma=5.8.1=hb9d3cd8_2
  - libmpdec=4.0.0=hb9d3cd8_0
  - libopenblas=0.3.30=pthreads_h94d23a6_3
  - libpng=1.6.50=h421ea60_1
  - libsqlite=3.51.0=hee844dc_0
  - libstdcxx=15.2.0=h8f9b012_7
  - libstdcxx-ng=15.2.0=h4852527_7
  - libtiff=4.7.1=h9d88235_1
  - libuuid=2.41.2=he9a06e4_0
  - libwebp-base=1.6.0=hd42ef1d_0
  - libxcb=1.17.0=h8a09558_0
  - libzlib=1.3.1=hb9d3cd8_2
  - matplotlib-base=3.10.7=py313h683a580_0
  - munkres=1.1.4=pyhd8ed1ab_1
  - ncurses=6.5=h2d0b736_3
  - numpy=2.3.4=py313hf6604e3_0
  - openjpeg=2.5.4=h55fea9a_0
  - openssl=3.6.0=h26f9b46_0
  - packaging=25.0=pyh29332c3_1
  - pandas=2.3.3=py313h08cd8bf_1
  - pillow=12.0.0=py313h50355cd_0
  - pip=25.3=pyh145f28c_0
  - pthread-stubs=0.4=hb9d3cd8_1002
  - pyparsing=3.2.5=pyhcf101f3_0
  - pyrodigal=3.6.3.post1=py313h366bbf7_1
  - python=3.13.9=hc97d973_101_cp313
  - python-dateutil=2.9.0.post0=pyhe01879c_2
  - python-tzdata=2025.2=pyhd8ed1ab_0
  - python_abi=3.13=8_cp313
  - pytz=2025.2=pyhd8ed1ab_0
  - qhull=2020.2=h434a139_5
  - readline=8.2=h8c095d6_2
  - scipy=1.16.3=py313h11c21cd_0
  - seaborn-base=0.13.2=pyhd8ed1ab_3
  - setuptools=80.9.0=pyhff2d567_0
  - six=1.17.0=pyhe01879c_1
  - tk=8.6.13=noxft_hd72426e_102
  - tzdata=2025b=h78e105d_0
  - xorg-libxau=1.0.12=hb9d3cd8_0
  - xorg-libxdmcp=1.1.5=hb9d3cd8_0
  - zlib-ng=2.2.5=hde8ca8f_0
  - zstd=1.5.7=hb8e6e7a_2
prefix: /workspace/lab/kalanlab/salamzar/multicellularity_and_bgcs/conda_envs/codoff_env_v1.2.3