Merge pull request #312 from OBOFoundry/cells_demo_2025-12-15

Add CLO:'cell line cell' & relevant hierarchy

Author: sebastianduesing

cob-root.owl

@@ -538,6 +538,16 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/CLO_0000001 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/CLO_0000001">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000010"/>
+        <obo:IAO_0000115 xml:lang="en">A cultured cell that is part of a cell line - a stable and homogeneous population of cells with a common biological origin and propagation history in culture</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">cell line cell</rdfs:label>
+    </owl:Class>
+    
+
+
     <!-- http://purl.obolibrary.org/obo/CL_0000000 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000">
@@ -550,6 +560,26 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/CL_0000010 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000010">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000578"/>
+        <obo:IAO_0000115 xml:lang="en">A cell in vitro that is or has been maintained or propagated as part of a cell culture.</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">cultured cell</rdfs:label>
+    </owl:Class>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/CL_0000578 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000578">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0001034"/>
+        <obo:IAO_0000115 xml:lang="en">A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure.</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">experimentally modified cell in vitro</rdfs:label>
+    </owl:Class>
+    
+
+
     <!-- http://purl.obolibrary.org/obo/CL_0001034 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0001034">

src/ontology/cob-edit.tsv

@@ -52,6 +52,9 @@ GO:0005575	cellular_component	owl:Class	A location, relative to cellular compart
 CL:0000000	cell	owl:Class	A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.	We struggled with this definition. We are worried about circularity. We also considered requiring the capability of metabolism.|CL and GO definitions of cell differ based on inclusive or exclusive of cell wall, etc.	FULL	in scope & unmodified from CL	material entity										
 PO:0009002	plant cell	owl:Class	A cell which is a plant structure (PO:0009011).		ROOT	root of Plant Ontology	cell										
 CL:0001034	cell in vitro	owl:Class	A cell that is maintained or propagated in a controlled artificial environment for use in an investigation.		ROOT	root of Cell Ontology	cell										
+CL:0000578	experimentally modified cell in vitro	owl:Class	A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure.		ROOT	bridge to root of Cell Line Ontology	cell in vitro										
+CL:0000010	cultured cell	owl:Class	A cell in vitro that is or has been maintained or propagated as part of a cell culture.		ROOT	bridge to root of Cell Line Ontology	experimentally modified cell in vitro										
+CLO:0000001	cell line cell	owl:Class	A cultured cell that is part of a cell line - a stable and homogeneous population of cells with a common biological origin and propagation history in culture		ROOT	root of Cell Line Ontology	cultured cell										
 COB:0000021	gross anatomical part	owl:Class	A part of a multicellular organism that is a collection of cell components that are not all contained in one cell.		FULL	temporarily has a COB ID; waiting on Uberon's 'gross anatomical part' term	material entity										
 UBERON:0000465	material anatomical entity	owl:Class	Anatomical entity that has mass.		ROOT GROUP		material entity		'cellular anatomical entity' or 'cell' or 'gross anatomical part' or 'organism'								
 PO:0025131	plant anatomical entity	owl:Class	An anatomical entity that is or was part of a plant.		ROOT GROUP: CHILD		material anatomical entity