paper.bib

@book{doherty2010approaches,
  title={Approaches to highly parameterized inversion: a guide to using PEST for groundwater-model calibration},
  author={Doherty, John E and Hunt, Randall J},
  volume={2010},
  year={2010},
  publisher={US Department of the Interior, US Geological Survey Reston, VA, USA},
  doi={10.3133/sir20105169}
}
@techreport{mercer2020amanzi,
  title={Amanzi--ATS: Modeling Environmental Systems across Scales [Brief]},
  author={Mercer-Smith, Janet Anne},
  number={LA-UR-20-26636},
  year={2020},
  institution={Los Alamos National Lab.(LANL), Los Alamos, NM (United States)},
  doi={10.2172/1657092}
}
@article{greer2022comparison,
  title={A Comparison of Linear Solvers for Resolving Flow in Three-Dimensional Discrete Fracture Networks},
  author={Greer, SY and Hyman, JD and O’Malley, Daniel},
  journal={Water Resources Research},
  volume={58},
  number={4},
  pages={e2021WR031188},
  year={2022},
  publisher={Wiley Online Library},
  doi={10.1029/2021wr031188}
}
@article{gelman2015stan,
  title={Stan: A probabilistic programming language for {Bayesian} inference and optimization},
  author={Gelman, Andrew and Lee, Daniel and Guo, Jiqiang},
  journal={Journal of Educational and Behavioral Statistics},
  volume={40},
  number={5},
  pages={530--543},
  year={2015},
  publisher={Sage Publications Sage CA: Los Angeles, CA},
  doi={10.3102/1076998615606113}
}
@article{wu2022inverse,
  title={Inverse analysis with variational autoencoders: a comparison of shallow and deep networks},
  author={Wu, Hao and O'Malley, Daniel and Golden, John K and Vesselinov, Velimir V},
  journal={Journal of Machine Learning for Modeling and Computing},
  volume={3},
  number={2},
  year={2022},
  publisher={Begel House Inc.},
  doi={10.1615/jmachlearnmodelcomput.2022042093}
}
@article{pachalieva2022physics,
  title={Physics-informed machine learning with differentiable programming for heterogeneous underground reservoir pressure management},
  author={Pachalieva, Aleksandra and O’Malley, Daniel and Harp, Dylan Robert and Viswanathan, Hari},
  journal={Scientific Reports},
  volume={12},
  number={1},
  pages={18734},
  year={2022},
  publisher={Nature Publishing Group UK London},
  doi={10.1038/s41598-022-22832-7}
}
@techreport{lichtner2015pflotran,
  title={PFLOTRAN user manual: A massively parallel reactive flow and transport model for describing surface and subsurface processes},
  author={Lichtner, Peter C and Hammond, Glenn E and Lu, Chuan and Karra, Satish and Bisht, Gautam and Andre, Benjamin and Mills, Richard and Kumar, Jitendra},
  year={2015},
  institution={Los Alamos National Lab.(LANL), Los Alamos, NM (United States); Sandia~…},
  doi={10.2172/1168703}
}
@techreport{zyvoloski1997summary,
  title={Summary of the models and methods for the FEHM application-a finite-element heat-and mass-transfer code},
  author={Zyvoloski, George A and Robinson, Bruce A and Dash, Zora V and Trease, Lynn L},
  year={1997},
  institution={Los Alamos National Lab.(LANL), Los Alamos, NM (United States)},
  doi={10.2172/14903}
}
@book{harbaugh2005modflow,
  title={MODFLOW-2005, the US Geological Survey modular ground-water model: the ground-water flow process},
  author={Harbaugh, Arlen W},
  volume={6},
  year={2005},
  publisher={US Department of the Interior, US Geological Survey Reston, VA, USA},
  doi={10.5066/F7RF5S7G}
}