the structure of the whole slide image dataset

[Yicijiuhaobala]

How can I get the structure of the whole slide image dataset as you prove. Now i have the part of datasets of TCGA, and they are in the format of SVS. How i can get this photo of each patches. Thanks

[Zhengyushan]

Hi, @Yicijiuhaobala. you may refer to the code at https://github.com/Zhengyushan/tcga2tile

[Tengxf]

Hello, I found the option to download the TCGA lung tissue slide data on the TCGA website. However, the SVS files I downloaded do not contain the corresponding category information. Could you please advise me on how to obtain this category information?

Hi, @Yicijiuhaobala. you may refer to the code at https://github.com/Zhengyushan/tcga2tile

[Zhengyushan]

The labels for the whole slide images can be found @https://github.com/Zhengyushan/kat/tree/main/dataset/tcga_lung.

[Tengxf]

整个幻灯片图像的标签可以在 @https://github.com/Zhengyushan/kat/tree/main/dataset/tcga_lung 中找到。

Thank you!

[Tengxf]

The labels for the whole slide images can be found @https://github.com/Zhengyushan/kat/tree/main/dataset/tcga_lung.

Hello, I was wondering if you could share the preprocessing code for WSI images that you used in your paper? I would like to know how to add a strong threshold to remove blank backgrounds in the code at https://github.com/Zhengyushan/tcga2tile. Thank you so much for your help!