Trying my luck here: I am taking over my ex-colleague's work and I know NOTHING about phylogenetic analysis etc. Basically, I am trying to recreate his XML file, but this time with different sequences.
In his XML file, he doesn't have the following:
<!-- For subtree defined by taxon set, Alpha: coalescent prior with constant population size. -->
<constantSize id="subtree.constant" units="years">
<populationSize>
<parameter id="subtree.constant.popSize" value="1.0" lower="0.0"/>
</populationSize>
</constantSize>
while I have the block above when I used BEAUTi. To be frank, I am not sure if he used BEAUTi, but I just thought of giving it a go, since it has a GUI, and it simplified it plenty for me.
I also realised that this problem appeared when I selected "mono" for the Alpha taxa set. Alpha was the first set; if any other taxa set was going first, then the above block will change to the corresponding first variant.
Thank you!
Trying my luck here: I am taking over my ex-colleague's work and I know NOTHING about phylogenetic analysis etc. Basically, I am trying to recreate his XML file, but this time with different sequences.
In his XML file, he doesn't have the following:
while I have the block above when I used BEAUTi. To be frank, I am not sure if he used BEAUTi, but I just thought of giving it a go, since it has a GUI, and it simplified it plenty for me.
I also realised that this problem appeared when I selected "mono" for the Alpha taxa set. Alpha was the first set; if any other taxa set was going first, then the above block will change to the corresponding first variant.
Thank you!