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Update docs from build -1
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‎.env.example‎

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LIQUID_EARTH_API_TOKEN = "foobar-1499cbe49808c8cfef14303d2aaacXDx-w1vc1bD065Wj0ABi3HD2fzQ"
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BOREHOLES_SOUTH_FOLDER = "/mnt/d/OneDrive - .../boreholes_south"

‎.github/FUNDING.yml‎

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# These are supported funding model platforms
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github: Leguark

‎.github/ISSUE_TEMPLATE/bug_report.md‎

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---
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name: Bug report
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about: Create a report to help us improve
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title: ''
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labels: ''
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assignees: ''
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---
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**Describe the bug**
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A clear and concise description of what the bug is. Include error messages /
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tracebacks. If useful include screenshots.
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**To Reproduce**
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Provide detailed steps to reproduce the behavior:
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1.
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2.
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3.
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...
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**Expected behavior**
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A clear and concise description of what you expected to happen.
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**Screenshots**
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If applicable, add screenshots to help explain your problem.
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**Desktop (please complete the following information):**
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* OS: (e.g. iOS)
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* GemPy Version
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* if installed via pip: provide GemPy version (e.g. 2.0.1)
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* if cloned from GitHub: provide Git commit id (e.g. 839bf85f)
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* Jupyter Version (if applicable)
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**Additional context**
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Add any other context about the problem here.

‎.github/ISSUE_TEMPLATE/feature_request.md‎

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---
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name: Feature request
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about: Suggest an idea for this project
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title: ''
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labels: ''
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assignees: ''
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---
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**Is your feature request related to a problem? Please describe.**
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A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
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**Describe the solution you'd like**
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A clear and concise description of what you want to happen.
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**Describe alternatives you've considered**
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A clear and concise description of any alternative solutions or features you've considered.
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**Additional context**
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Add any other context or screenshots about the feature request here.

‎.github/ISSUE_TEMPLATE/question.md‎

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---
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name: Question
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about: Ask a question about GemPy
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title: ''
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labels: ''
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assignees: ''
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---
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**What is your question?**

‎.github/PULL_REQUEST_TEMPLATE.md‎

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# Description
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Please include a summary of the changes.
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Relates to <issue>
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# Checklist
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- [ ] My code uses type hinting for function and method arguments and return values.
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- [ ] I have created tests which cover my code.
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- [ ] The test code either 1. demonstrates at least one valuable use case (e.g. integration tests)
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or 2. verifies that outputs are as expected for given inputs (e.g. unit tests).
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- [ ] New tests pass locally with my changes.
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‎.gitignore‎

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.vscode
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.idea
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.DS_Store
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.vs
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.cache/
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GeMpy/__pycache__/__init__.cpython-36.pyc
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GeMpy/__pycache__/geomodeller_xml_obj.cpython-36.pyc
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GeMpy/geomodeller_xml_obj.py.bak
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GeMpy/qgrid/__pycache__/
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../gempy_plugins/gempy_plugins/addons/RexCloud_Api_key.txt
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docs/source/Notebooks/Erosion.rst
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docs/source/Notebooks/Example_1_Sandstone_files/Example_1_Sandstone_39_0.png
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docs/source/Notebooks/Example_1_Sandstone_files/Example_1_Sandstone_41_0.png
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docs/source/Notebooks/Example_1_Sandstone_files/Example_1_Sandstone_46_1.png
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docs/source/Notebooks/Example_2_Simple_PyMC3_files/
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docs/source/Notebooks/Example_3_Faults_files/
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docs/source/Notebooks/OptimizationNotebook.rst
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docs/source/Notebooks/legacy/
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docs/source/index_legacy.rst
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input_data/Erosion_Foliations.csv
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input_data/Erosion_Points.csv
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input_data/FabLessPoints_Foliations.csv
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input_data/FabLessPoints_Points.csv
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input_data/Fab_Model_MorePoints_Foliations.csv
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input_data/Fab_Model_MorePoints_Points.csv
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input_data/Intrusion-test/
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legacy/.ipynb_checkpoints/
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test/.ipynb_checkpoints/
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test/__pycache__/
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test/legacy/
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test/log
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test/log2
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/legacy/geomodeller_xml_obj.py.bak
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!/notebooks/input_data/FabLessPoints_Foliations.csv
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!/notebooks/input_data/FabLessPoints_Points.csv
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### Python template
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# Byte-compiled / optimized / DLL files
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__pycache__/
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*.py[cod]
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*$py.class
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# C extensions
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*.so
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# Distribution / packaging
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.Python
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env/
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develop-eggs/
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dist/
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downloads/
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eggs/
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.eggs/
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lib/
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lib64/
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parts/
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sdist/
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var/
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wheels/
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*.egg-info/
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.installed.cfg
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*.egg
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# PyInstaller
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# Usually these files are written by a python script from a template
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# before PyInstaller builds the exe, so as to inject date/other infos into it.
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*.manifest
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*.spec
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# Installer logs
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pip-log.txt
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pip-delete-this-directory.txt
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# Unit test / coverage reports
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htmlcov/
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.tox/
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.coverage
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.coverage.*
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.cache
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nosetests.xml
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coverage.xml
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*,cover
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.hypothesis/
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# Translations
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*.mo
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*.pot
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# Django stuff:
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*.log
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local_settings.py
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# Flask stuff:
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instance/
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.webassets-cache
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# Scrapy stuff:
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.scrapy
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# PyBuilder
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target/
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# Jupyter Notebook
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.ipynb_checkpoints
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# pyenv
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.python-version
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# celery beat schedule file
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celerybeat-schedule
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# SageMath parsed files
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*.sage.py
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# dotenv
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.env
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# virtualenv
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.venv
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venv/
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ENV/
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# Spyder project settings
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.spyderproject
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# Rope project settings
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.ropeproject
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notebooks/prototype notebooks/vtks
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notebooks/prototype notebooks/vtk_res_model_adjusted_1
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notebooks/prototype notebooks/vtk_exp_smooth_trnasitions
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notebooks/prototype notebooks/plots
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# Remove the built document files - but not the static ones, which are required for the builds
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docs/build
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# The following files are generated locally during sphinx updates - they don't have to be part of the repo
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docs/source/examples
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docs/source/tutorials
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docs/source/Modeling\ Classes
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docs/source/GemPy\ API
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docs/source/Helper\ Classes
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docs/source/Plot
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docs/source/external
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docs/source/sg_execution_times.rst
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test/figs
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Profiles
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examples/data/input_data/Claudius/Results_
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/docs/source/gen_modules/
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#examples folders
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examples/integrations/*.vs
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examples/integrations/*.ugi
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examples/integrations/*.h5
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examples/integrations/*.xmf
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examples/integrations/*.ss
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examples/integrations/*.out
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# Approval tests
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*.received.txt
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*.Identifier
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/.obsidian/app.json
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/.obsidian/appearance.json
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/.obsidian/core-plugins.json
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/.obsidian/core-plugins-migration.json
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/.obsidian/hotkeys.json
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/.obsidian/workspace.json
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# Ignore generated tutorial files
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examples/tutorials/z_other_tutorials/json_io/04_simple_layer_stack.py
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examples/tutorials/z_other_tutorials/json_io/fault_scalar_field.png
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examples/tutorials/z_other_tutorials/json_io/initial_model_y.png
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examples/tutorials/z_other_tutorials/json_io/model_with_data.png
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examples/tutorials/z_other_tutorials/json_io/multiple_series_faults_computed.json
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# Generated JSON files from examples
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examples/tutorials/z_other_tutorials/json_io/combination_model.json
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examples/tutorials/z_other_tutorials/json_io/combination_model_computed.json

‎.travis.yml‎

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language: python
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os: linux
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dist: xenial
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branches:
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only:
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- master
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- release
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python:
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- '3.8'
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before_install:
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# configure a headless display
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- git clone --depth 1 git://github.com/pyvista/gl-ci-helpers.git
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- source ./gl-ci-helpers/travis/setup_headless_display.sh
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install:
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- sudo apt-get update
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# We do this conditionally because it saves us some downloading if the
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# version is the same.
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- wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
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- bash miniconda.sh -b -p $HOME/miniconda
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- export PATH="$HOME/miniconda/bin:$PATH"
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- hash -r
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- conda config --set always_yes yes --set changeps1 no
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- conda update --all
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# Useful for debugging any issues with conda
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- conda info -a
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# Install and activate environment, install packages
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- conda create -q -n tenv python=$TRAVIS_PYTHON_VERSION
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- source activate tenv
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# Installs from conda-forge
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- conda install -c conda-forge python-graphviz
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- conda install -c conda-forge pip matplotlib ipython six pytest pytest-cov ipywidgets
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- conda install -c conda-forge recommonmark networkx panel setuptools mkl-service
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# Installs from anaconda
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- conda install -c anaconda libffi
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- conda install aesara
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# Installs from pip
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- pip install welly pymc3
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- pip install scikit-image>=0.17 sklearn
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- pip install pandas seaborn>=0.9 sphinx-gallery
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# Install
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- pip install -e .
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# Pyvista should have been fixed- pip install pyvista
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# Arviz broke with xarray update
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- pip install git+https://github.com/arviz-devs/arviz --force-reinstall
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# Install subsurface
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- pip install subsurface
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- conda install -c conda-forge gdal
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- python -c "import pyvista as pv;print(pv.Report())"
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- pip install pooch
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stages:
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- test
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jobs:
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include:
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- stage: test
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script:
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- pytest -v
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cache: pip

‎AUTHORS.rst‎

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.. _authors_ref:
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Authors
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-------
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.. image:: https://img.shields.io/github/contributors/gempy-project/gempy_engine.svg?logo=github&logoColor=white
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:target: https://github.com/gempy-projects/gempy_engine/graphs/contributors/
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The following is a list of authors who have made substantial contributions to
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the conception or design of this software; or the creation of new code used in
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this software; or have drafted the work or substantively revised it:
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- Miguel de la Varga, (`@leguark <https://github.com/leguark/>`_)
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- Alexander Zimmerman
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- Elisa Heim
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- Alexander Schaaf
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- Fabian Stamm
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- Florian Wellmann

‎CITATION.cff‎

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cff-version: 1.2.0
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message: "If you use GemPy, please cite it as below."
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authors:
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- family-names: "de la Varga"
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given-names: "Miguel"
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orcid: https://orcid.org/0000-0001-6941-2685
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- family-names: "Schaaf"
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given-names: "Alexander"
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- family-names: "Wellmann"
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given-names: "Florian"
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orcid: https://orcid.org/0000-0003-2552-1876
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title: "GemPy 1.0: open-source stochastic geological modeling and inversion"
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version: 1.0
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doi: https://doi.org/10.5194/gmd-12-1-2019
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date-released: 2019-01-02
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url: "https://github.com/cgre-aachen/gempy"

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