Skip to content

Update citation in README #44

Update citation in README

Update citation in README #44

Triggered via push March 27, 2026 16:23
Status Success
Total duration 16m 51s
Artifacts
Matrix: rworkflows
Fit to window
Zoom out
Zoom in

Annotations

16 errors and 6 warnings
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getLineGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Network I/O Read (MB)"},"timeTicks":{"unit":"auto"}},"lines":[{"label":"Read","color":"#be4d25","points":[{"x":1774628649447,"y":0},{"x":1774628654421,"y":212},{"x":1774628659418,"y":89},{"x":1774628664415,"y":0},{"x":1774628669423,"y":0},{"x":1774628674417,"y":0},{"x":1774628679418,"y":0},{"x":1774628684417,"y":12},{"x":1774628689418,"y":57},{"x":1774628694425,"y":0},{"x":1774628699417,"y":0},{"x":1774628704417,"y":0},{"x":1774628709417,"y":0},{"x":1774628714420,"y":0},{"x":1774628719416,"y":0},{"x":1774628724418,"y":0},{"x":1774628729416,"y":0},{"x":1774628734418,"y":0},{"x":1774628739416,"y":5},{"x":1774628744419,"y":97},{"x":1774628749419,"y":0},{"x":1774628754422,"y":0},{"x":1774628759419,"y":3},{"x":1774628764417,"y":1},{"x":1774628769420,"y":20},{"x":1774628774452,"y":0},{"x":1774628779421,"y":0},{"x":1774628784419,"y":0},{"x":1774628789416,"y":0},{"x":1774628794420,"y":3},{"x":1774628799418,"y":0},{"x":1774628804416,"y":0},{"x":1774628809419,"y":59},{"x":1774628814415,"y":234},{"x":1774628819414,"y":286},{"x":1774628824413,"y":295},{"x":1774628829415,"y":294},{"x":1774628834415,"y":286},{"x":1774628839415,"y":295},{"x":1774628844415,"y":293},{"x":1774628849415,"y":282},{"x":1774628854420,"y":0},{"x":1774628859415,"y":0},{"x":1774628864414,"y":0},{"x":1774628869421,"y":0},{"x":1774628874416,"y":0},{"x":1774628879415,"y":0},{"x":1774628884416,"y":0},{"x":1774628889414,"y":0},{"x":1774628894416,"y":0},{"x":1774628899415,"y":0},{"x":1774628904415,"y":0},{"x":1774628909414,"y":0},{"x":1774628914416,"y":0},{"x":1774628919416,"y":0},{"x":1774628924415,"y":0},{"x":1774628929419,"y":0},{"x":1774628934415,"y":0},{"x":1774628939415,"y":0},{"x":1774628944416,"y":0},{"x":1774628949416,"y":0},{"x":1774628954415,"y":0},{"x":1774628959414,"y":0},{"x":1774628964415,"y":0},{"x":1774628969415,"y":0},{"x":1774628974416,"y":0},{"x":1774628979415,"y":0},{"x":1774628984415,"y":0},{"x":1774628989414,"y":0},{"x":1774628994415,"y":0},{"x":1774628999416,"y":0},{"x":1774629004415,"y":0},{"x":1774629009416,"y":0},{"x":1774629014414,"y":0},{"x":1774629019416,"y":5},{"x":1774629024417,"y":0},{"x":1774629029416,"y":0},{"x":1774629034415,"y":2},{"x":1774629039415,"y":0},{"x":1774629044418,"y":0},{"x":1774629049417,"y":0},{"x":1774629054416,"y":0},{"x":1774629059416,"y":0},{"x":1774629064415,"y":0},{"x":1774629069415,"y":0},{"x":1774629074415,"y":0},{"x":1774629079415,"y":0},{"x":1774629084415,"y":0},{"x":1774629089419,"y":0},{"x":1774629094421,"y":0},{"x":1774629099415,"y":0},{"x":1774629104415,"y":0},{"x":1774629109418,"y":0},{"x":1774629114416,"y":0},{"x":1774629119416,"y":0},{"x":1774629124413,"y":0},{"x":1774629129416,"y":0},{"x":1774629134413,"y":0},{"x":1774629139417,"y":0},{"x":1774629144415,"y":0},{"x":1774629149415,"y":0},{"x":1774629154416,"y":0},{"x":1774629159417,"y":0},{"x":1774629164419,"y":108},{"x":1774629169416,"y":0},{"x":1774629174416,"y":0},{"x":1774629179417,"y":0},{"x":1774629184417,"y":86},{"x":1774629189415,"y":0},{"x":1774629194416,"y":187},{"x":1774629199415,"y":227},{"x":1774629204413,"y":636},{"x":1774629209416,"y":620},{"x":1774629214416,"y":629},{"x":1774629219415,"y":605},{"x":1774629224415,"y":0},{"x":1774629229416,"y":0},{"x":1774629234420,"y":0},{"x":1774629239419,"y":0},{"x":1774629244425,"y":0},{"x":1774629249417,"y":0},{"x":1774629254415,"y":0},{"x":1774629259415,"y":0},{"x":1774629264415,"y":0},{"x":1774629269415,"y":0},{"x":1774629274416,"y":0},{"x":1774629279417,"y":0},{"x":1774629284418,"y":0},{"x":1774629289416,"y":0},{"x":1774629294415,"y":0},{"x":1774629299415,"y":0},{"x":1774629304416,"y":0},{"x":1774629309415,"y":0},{"x":1774629314416,"y":0},{"x":1774629319415,"y":0},{"x":1774629324415,"y":3},{"x":1774629329415,"y":3},{"x":1774629334415,"y":0},{"x":1774629339416,"y":0},{"x":1774629344416,"y":0},{"x":1774629349415,"y":0},{"x":1774629354415,"y":0},{"x":1774629359416,"y":1},{"x":1774629364415,"y":0},{"x":1774629369415,"y":0},{"x":1774629374414,"y":0},{"x":1774629379417,"y":0},{"x":177462938
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1774628649447,"y":3096.578125},{"x":1774628654421,"y":3091.203125},{"x":1774628659418,"y":3063.078125},{"x":1774628664415,"y":3070.1875},{"x":1774628669423,"y":3043.3125},{"x":1774628674417,"y":3032.015625},{"x":1774628679418,"y":3009.703125},{"x":1774628684417,"y":2991.171875},{"x":1774628689418,"y":2890.296875},{"x":1774628694425,"y":2979.375},{"x":1774628699417,"y":2918.8125},{"x":1774628704417,"y":2926.4375},{"x":1774628709417,"y":2947.234375},{"x":1774628714420,"y":2924.140625},{"x":1774628719416,"y":2959.71875},{"x":1774628724418,"y":2859.484375},{"x":1774628729416,"y":2998.765625},{"x":1774628734418,"y":2986.9375},{"x":1774628739416,"y":2478.28125},{"x":1774628744419,"y":2635.140625},{"x":1774628749419,"y":2700.109375},{"x":1774628754422,"y":2717.328125},{"x":1774628759419,"y":2880.4375},{"x":1774628764417,"y":2987.265625},{"x":1774628769420,"y":2934.0625},{"x":1774628774452,"y":2985.53125},{"x":1774628779421,"y":2967.0625},{"x":1774628784419,"y":2936.234375},{"x":1774628789416,"y":1629.3125},{"x":1774628794420,"y":1939.875},{"x":1774628799418,"y":1796.78125},{"x":1774628804416,"y":2252.375},{"x":1774628809419,"y":2321.5},{"x":1774628814415,"y":2348.125},{"x":1774628819414,"y":2402.328125},{"x":1774628824413,"y":2382.203125},{"x":1774628829415,"y":2308.1875},{"x":1774628834415,"y":2505.21875},{"x":1774628839415,"y":2595.59375},{"x":1774628844415,"y":2653.046875},{"x":1774628849415,"y":2688.40625},{"x":1774628854420,"y":2943.015625},{"x":1774628859415,"y":2930.09375},{"x":1774628864414,"y":2927.40625},{"x":1774628869421,"y":2925.296875},{"x":1774628874416,"y":2920.171875},{"x":1774628879415,"y":2914.84375},{"x":1774628884416,"y":2916.09375},{"x":1774628889414,"y":2918.015625},{"x":1774628894416,"y":2913.0625},{"x":1774628899415,"y":2901.453125},{"x":1774628904415,"y":2920.359375},{"x":1774628909414,"y":1842.09375},{"x":1774628914416,"y":1927.875},{"x":1774628919416,"y":1942},{"x":1774628924415,"y":2001.203125},{"x":1774628929419,"y":2121.296875},{"x":1774628934415,"y":2261.90625},{"x":1774628939415,"y":2340.453125},{"x":1774628944416,"y":2287.703125},{"x":1774628949416,"y":2398.765625},{"x":1774628954415,"y":2361.609375},{"x":1774628959414,"y":2421.84375},{"x":1774628964415,"y":2455.09375},{"x":1774628969415,"y":2535.796875},{"x":1774628974416,"y":2549.234375},{"x":1774628979415,"y":2535.78125},{"x":1774628984415,"y":2670.421875},{"x":1774628989414,"y":2649.796875},{"x":1774628994415,"y":2708.0625},{"x":1774628999416,"y":2699.515625},{"x":1774629004415,"y":2717.953125},{"x":1774629009416,"y":2730.734375},{"x":1774629014414,"y":2708.078125},{"x":1774629019416,"y":2727.546875},{"x":1774629024417,"y":2710.015625},{"x":1774629029416,"y":2714.9375},{"x":1774629034415,"y":2676.90625},{"x":1774629039415,"y":2753.109375},{"x":1774629044418,"y":2863.734375},{"x":1774629049417,"y":2863.765625},{"x":1774629054416,"y":2937.453125},{"x":1774629059416,"y":2937.8125},{"x":1774629064415,"y":2949.4375},{"x":1774629069415,"y":2949.203125},{"x":1774629074415,"y":2851.921875},{"x":1774629079415,"y":2861.09375},{"x":1774629084415,"y":2949.859375},{"x":1774629089419,"y":2938.03125},{"x":1774629094421,"y":2947.09375},{"x":1774629099415,"y":2944.3125},{"x":1774629104415,"y":2951.109375},{"x":1774629109418,"y":2392.921875},{"x":1774629114416,"y":2468.5625},{"x":1774629119416,"y":2526.46875},{"x":1774629124413,"y":2575.265625},{"x":1774629129416,"y":2588.578125},{"x":1774629134413,"y":2626.65625},{"x":1774629139417,"y":2604.796875},{"x":1774629144415,"y":2631.203125},{"x":1774629149415,"y":2662.25},{"x":1774629154416,"y":2690.46875},{"x":1774629159417,"y":2090.703125},{"x":1774629164419,"y":2282.515625},{"x":1774629169416,"y":2443.4375},{"x":1774629174416,"y":2630.59375},{"x":1774629179417,"y":2746.96875},{"x":1774629184417,"y":2922.234375},{"x":1774629189415,"y":2942.609375},{"x":1774629194416,"y":2925.65625},{"x
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1774628649447,"y":49.214896130063224},{"x":1774628654421,"y":49.7001998667555},{"x":1774628659418,"y":55.77956989247311},{"x":1774628664415,"y":46.03068712474983},{"x":1774628669423,"y":58.56760374832663},{"x":1774628674417,"y":46.715817694369974},{"x":1774628679418,"y":53.733333333333334},{"x":1774628684417,"y":51.800000000000004},{"x":1774628689418,"y":56.35395874916833},{"x":1774628694425,"y":64.24282855236825},{"x":1774628699417,"y":46.47414372061787},{"x":1774628704417,"y":49.26372155287818},{"x":1774628709417,"y":61.574382921947965},{"x":1774628714420,"y":70.93791281373845},{"x":1774628719416,"y":57.870060281312796},{"x":1774628724418,"y":59.4},{"x":1774628729416,"y":56.045424181696724},{"x":1774628734418,"y":43.762508338892594},{"x":1774628739416,"y":51.901267511674455},{"x":1774628744419,"y":41.61073825503356},{"x":1774628749419,"y":33.134130146082335},{"x":1774628754422,"y":58.14419225634179},{"x":1774628759419,"y":58.46153846153847},{"x":1774628764417,"y":71.12299465240642},{"x":1774628769420,"y":54.36957971981321},{"x":1774628774452,"y":38.41187863137508},{"x":1774628779421,"y":55.769230769230774},{"x":1774628784419,"y":60.45272969374168},{"x":1774628789416,"y":55.34633490248824},{"x":1774628794420,"y":50.066489361702125},{"x":1774628799418,"y":36.97253851306095},{"x":1774628804416,"y":47.06666666666667},{"x":1774628809419,"y":40.31936127744511},{"x":1774628814415,"y":48.89187374076561},{"x":1774628819414,"y":55.91182364729459},{"x":1774628824413,"y":41.8230563002681},{"x":1774628829415,"y":38.3898868928809},{"x":1774628834415,"y":39.91989319092123},{"x":1774628839415,"y":45.733333333333334},{"x":1774628844415,"y":48.4},{"x":1774628849415,"y":35.83389149363697},{"x":1774628854420,"y":37.49166110740494},{"x":1774628859415,"y":40.738255033557046},{"x":1774628864414,"y":25.201072386058982},{"x":1774628869421,"y":14.437086092715232},{"x":1774628874416,"y":16.08961303462322},{"x":1774628879415,"y":17.81187458305537},{"x":1774628884416,"y":27.74798927613941},{"x":1774628889414,"y":19.261744966442954},{"x":1774628894416,"y":24.347826086956523},{"x":1774628899415,"y":17.236753856472166},{"x":1774628904415,"y":17.560321715817693},{"x":1774628909414,"y":15.446071904127828},{"x":1774628914416,"y":43.683510638297875},{"x":1774628919416,"y":14.996637525218562},{"x":1774628924415,"y":19.43699731903485},{"x":1774628929419,"y":33.37765957446808},{"x":1774628934415,"y":55.845023380093515},{"x":1774628939415,"y":70.21985343104596},{"x":1774628944416,"y":58.53333333333334},{"x":1774628949416,"y":45.36357571714476},{"x":1774628954415,"y":61.070234113712374},{"x":1774628959414,"y":59.62691538974018},{"x":1774628964415,"y":64.17611741160773},{"x":1774628969415,"y":61.780455153949134},{"x":1774628974416,"y":38.107928047968024},{"x":1774628979415,"y":19.973190348525467},{"x":1774628984415,"y":40.26578073089701},{"x":1774628989414,"y":55.60000000000001},{"x":1774628994415,"y":42.8475935828877},{"x":1774628999416,"y":28.01608579088472},{"x":1774629004415,"y":31.424766977363518},{"x":1774629009416,"y":22.88021534320323},{"x":1774629014414,"y":24.664879356568363},{"x":1774629019416,"y":19.919786096256683},{"x":1774629024417,"y":20.4560697518444},{"x":1774629029416,"y":18.808567603748326},{"x":1774629034415,"y":18.897108271687962},{"x":1774629039415,"y":18.48404255319149},{"x":1774629044418,"y":20.443846671149966},{"x":1774629049417,"y":18.712273641851105},{"x":1774629054416,"y":16.355140186915886},{"x":1774629059416,"y":12.901069518716577},{"x":1774629064415,"y":18.59531772575251},{"x":1774629069415,"y":18.498659517426276},{"x":1774629074415,"y":17.13520749665328},{"x":1774629079415,"y":27.900737759892692},{"x":1774629084415,"y":24.983255190890823},{"x":1774629089419,"y":23.965287049399198},{"x":1774629094421,"y":26.03748326639893},{"x":1774629099415,"y":19.42397856664434},{"x":1774629104415,"y":19.892473118279
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
ubuntu-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
SystemRequirements specified C++11: support has been removed
macOS-latest (auto)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (auto)
harfbuzz 13.2.1 is already installed and up-to-date. To reinstall 13.2.1, run: brew reinstall harfbuzz