Merge pull request #16 from joshmoore/0_5_0

joshmoore · web-flow · commit 96a03b100fd8 · 2022-10-31T13:49:58.000+01:00
Bump to bioformats2raw 0.5.0
diff --git a/bioformats2raw-libs/meta.yaml b/bioformats2raw-libs/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "bioformats2raw-libs" %}
-{% set version = "0.5.0rc2" %}
-{% set github_version = "0.5.0-rc2" %}
+{% set version = "0.5.0" %}
+{% set github_version = "0.5.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -12,7 +12,7 @@ build:
 
 source:
   url: https://github.com/glencoesoftware/bioformats2raw/releases/download/v{{ version }}/bioformats2raw-{{ github_version }}.zip
-  sha256: 70a7b84bd91cafc1803a0fef1994e58731b3058659f8c066311b29c796ea5897
+  sha256: 23f88a70c6ee94998e08420a465f8497b6da561488ac1dc3f56335c9763064d0
 
 # Leave the OS specific dependencies to the wrapper
 requirements:
diff --git a/bioformats2raw/meta.yaml b/bioformats2raw/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "bioformats2raw" %}
-{% set version = "0.5.0rc2" %}
-{% set github_version = "0.5.0-rc2" %}
+{% set version = "0.5.0" %}
+{% set github_version = "0.5.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -11,7 +11,7 @@ build:
 
 source:
   url: https://github.com/glencoesoftware/{{ name }}/releases/download/v{{ version }}/{{ name }}-{{ github_version }}.zip
-  sha256: 70a7b84bd91cafc1803a0fef1994e58731b3058659f8c066311b29c796ea5897
+  sha256: 23f88a70c6ee94998e08420a465f8497b6da561488ac1dc3f56335c9763064d0
   patches:
     - windows-bat-classpath-wildcard.patch  # [win]
 
diff --git a/bioformats2raw/windows-bat-classpath-wildcard.patch b/bioformats2raw/windows-bat-classpath-wildcard.patch
@@ -4,7 +4,7 @@
  :execute
  @rem Setup the command line
  
--set CLASSPATH=%APP_HOME%\lib\bioformats2raw-0.5.0-rc2.jar;%APP_HOME%\lib\jzarr-0.3.5.jar;%APP_HOME%\lib\jblosc-1.0.1.jar;%APP_HOME%\lib\jna-5.10.0.jar;%APP_HOME%\lib\formats-gpl-6.9.1.jar;%APP_HOME%\lib\picocli-4.6.1.jar;%APP_HOME%\lib\univocity-parsers-2.8.4.jar;%APP_HOME%\lib\s3fs-2.2.3.jar;%APP_HOME%\lib\jaxb-api-2.3.0.jar;%APP_HOME%\lib\opencv-3.4.2-1.jar;%APP_HOME%\lib\progressbar-0.9.0.jar;%APP_HOME%\lib\formats-bsd-6.9.1.jar;%APP_HOME%\lib\formats-api-6.9.1.jar;%APP_HOME%\lib\ome-xml-6.2.3.jar;%APP_HOME%\lib\metakit-5.3.3.jar;%APP_HOME%\lib\ome-poi-5.3.4.jar;%APP_HOME%\lib\ome-codecs-0.3.1.jar;%APP_HOME%\lib\ome-common-6.0.7.jar;%APP_HOME%\lib\ome-mdbtools-5.3.2.jar;%APP_HOME%\lib\cdm-core-5.3.3.jar;%APP_HOME%\lib\jcl-over-slf4j-1.7.5.jar;%APP_HOME%\lib\logback-classic-1.2.0.jar;%APP_HOME%\lib\jxrlib-all-0.2.4.jar;%APP_HOME%\lib\native-lib-loader-2.1.4.jar;%APP_HOME%\lib\udunits-5.3.3.jar;%APP_HOME%\lib\httpservices-5.3.3.jar;%APP_HOME%\lib\slf4j-api-1.7.28.jar;%APP_HOME%\lib\JWlz-1.4.0.jar;%APP_HOME%\lib\minio-5.0.2.jar;%APP_HOME%\lib\aws-java-sdk-s3-1.11.232.jar;%APP_HOME%\lib\aws-java-sdk-kms-1.11.232.jar;%APP_HOME%\lib\aws-java-sdk-core-1.11.232.jar;%APP_HOME%\lib\joda-time-2.10.3.jar;%APP_HOME%\lib\kryo-4.0.2.jar;%APP_HOME%\lib\aircompressor-0.18.jar;%APP_HOME%\lib\json-20090211.jar;%APP_HOME%\lib\sqlite-jdbc-3.28.0.jar;%APP_HOME%\lib\jmespath-java-1.11.232.jar;%APP_HOME%\lib\jackson-databind-2.11.3.jar;%APP_HOME%\lib\guava-29.0-jre.jar;%APP_HOME%\lib\tika-core-1.5.jar;%APP_HOME%\lib\jsr305-3.0.2.jar;%APP_HOME%\lib\jline-3.16.0.jar;%APP_HOME%\lib\logback-core-1.2.0.jar;%APP_HOME%\lib\xalan-2.7.2.jar;%APP_HOME%\lib\serializer-2.7.2.jar;%APP_HOME%\lib\specification-6.2.3.jar;%APP_HOME%\lib\turbojpeg-6.9.1.jar;%APP_HOME%\lib\jgoodies-forms-1.7.2.jar;%APP_HOME%\lib\commons-lang-2.6.jar;%APP_HOME%\lib\perf4j-0.9.16.jar;%APP_HOME%\lib\jhdf5-19.04.0.jar;%APP_HOME%\lib\metadata-extractor-2.11.0.jar;%APP_HOME%\lib\xercesImpl-2.8.1.jar;%APP_HOME%\lib\httpmime-4.5.9.jar;%APP_HOME%\lib\google-http-client-xml-1.20.0.jar;%APP_HOME%\lib\google-http-client-1.20.0.jar;%APP_HOME%\lib\httpclient-4.5.9.jar;%APP_HOME%\lib\commons-logging-1.2.jar;%APP_HOME%\lib\jdom2-2.0.6.jar;%APP_HOME%\lib\protobuf-java-3.9.1.jar;%APP_HOME%\lib\jcommander-1.78.jar;%APP_HOME%\lib\httpcore-4.4.11.jar;%APP_HOME%\lib\re2j-1.3.jar;%APP_HOME%\lib\reflectasm-1.11.3.jar;%APP_HOME%\lib\minlog-1.3.0.jar;%APP_HOME%\lib\objenesis-2.5.1.jar;%APP_HOME%\lib\jackson-annotations-2.11.3.jar;%APP_HOME%\lib\jackson-dataformat-cbor-2.6.7.jar;%APP_HOME%\lib\jackson-core-2.11.3.jar;%APP_HOME%\lib\junit-4.12.jar;%APP_HOME%\lib\failureaccess-1.0.1.jar;%APP_HOME%\lib\listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar;%APP_HOME%\lib\checker-qual-2.11.1.jar;%APP_HOME%\lib\error_prone_annotations-2.3.4.jar;%APP_HOME%\lib\j2objc-annotations-1.3.jar;%APP_HOME%\lib\okhttp-3.7.0.jar;%APP_HOME%\lib\okio-1.12.0.jar;%APP_HOME%\lib\xml-apis-1.3.04.jar;%APP_HOME%\lib\ome-jai-0.1.0.jar;%APP_HOME%\lib\jgoodies-common-1.7.0.jar;%APP_HOME%\lib\base-18.09.0.jar;%APP_HOME%\lib\commons-io-2.7.jar;%APP_HOME%\lib\commons-lang3-3.10.jar;%APP_HOME%\lib\xmpcore-5.1.3.jar;%APP_HOME%\lib\asm-5.0.4.jar;%APP_HOME%\lib\hamcrest-core-1.3.jar;%APP_HOME%\lib\ion-java-1.0.2.jar;%APP_HOME%\lib\xpp3-1.1.4c.jar;%APP_HOME%\lib\commons-codec-1.11.jar
+-set CLASSPATH=%APP_HOME%\lib\bioformats2raw-0.5.0.jar;%APP_HOME%\lib\jzarr-0.3.5.jar;%APP_HOME%\lib\jblosc-1.0.1.jar;%APP_HOME%\lib\jna-5.10.0.jar;%APP_HOME%\lib\formats-gpl-6.10.1.jar;%APP_HOME%\lib\picocli-4.6.1.jar;%APP_HOME%\lib\univocity-parsers-2.8.4.jar;%APP_HOME%\lib\s3fs-2.2.3.jar;%APP_HOME%\lib\jaxb-api-2.3.0.jar;%APP_HOME%\lib\opencv-3.4.2-1.jar;%APP_HOME%\lib\progressbar-0.9.0.jar;%APP_HOME%\lib\formats-bsd-6.10.1.jar;%APP_HOME%\lib\formats-api-6.10.1.jar;%APP_HOME%\lib\ome-xml-6.3.1.jar;%APP_HOME%\lib\metakit-5.3.4.jar;%APP_HOME%\lib\ome-poi-5.3.7.jar;%APP_HOME%\lib\ome-codecs-0.3.2.jar;%APP_HOME%\lib\ome-common-6.0.13.jar;%APP_HOME%\lib\ome-mdbtools-5.3.2.jar;%APP_HOME%\lib\cdm-core-5.3.3.jar;%APP_HOME%\lib\jcl-over-slf4j-1.7.5.jar;%APP_HOME%\lib\logback-classic-1.2.9.jar;%APP_HOME%\lib\jxrlib-all-0.2.4.jar;%APP_HOME%\lib\native-lib-loader-2.1.4.jar;%APP_HOME%\lib\udunits-5.3.3.jar;%APP_HOME%\lib\httpservices-5.3.3.jar;%APP_HOME%\lib\slf4j-api-1.7.32.jar;%APP_HOME%\lib\JWlz-1.4.0.jar;%APP_HOME%\lib\minio-5.0.2.jar;%APP_HOME%\lib\aws-java-sdk-s3-1.11.232.jar;%APP_HOME%\lib\aws-java-sdk-kms-1.11.232.jar;%APP_HOME%\lib\aws-java-sdk-core-1.11.232.jar;%APP_HOME%\lib\joda-time-2.10.3.jar;%APP_HOME%\lib\kryo-4.0.2.jar;%APP_HOME%\lib\aircompressor-0.18.jar;%APP_HOME%\lib\json-20090211.jar;%APP_HOME%\lib\sqlite-jdbc-3.28.0.jar;%APP_HOME%\lib\jmespath-java-1.11.232.jar;%APP_HOME%\lib\jackson-annotations-2.12.7.jar;%APP_HOME%\lib\jackson-dataformat-cbor-2.12.7.jar;%APP_HOME%\lib\jackson-core-2.12.7.jar;%APP_HOME%\lib\jackson-databind-2.12.7.jar;%APP_HOME%\lib\guava-29.0-jre.jar;%APP_HOME%\lib\tika-core-1.5.jar;%APP_HOME%\lib\jsr305-3.0.2.jar;%APP_HOME%\lib\jline-3.16.0.jar;%APP_HOME%\lib\logback-core-1.2.9.jar;%APP_HOME%\lib\xalan-2.7.2.jar;%APP_HOME%\lib\serializer-2.7.2.jar;%APP_HOME%\lib\specification-6.3.1.jar;%APP_HOME%\lib\turbojpeg-6.10.1.jar;%APP_HOME%\lib\jgoodies-forms-1.7.2.jar;%APP_HOME%\lib\commons-lang-2.6.jar;%APP_HOME%\lib\perf4j-0.9.16.jar;%APP_HOME%\lib\jhdf5-19.04.0.jar;%APP_HOME%\lib\metadata-extractor-2.18.0.jar;%APP_HOME%\lib\xercesImpl-2.12.2.jar;%APP_HOME%\lib\xml-apis-1.4.01.jar;%APP_HOME%\lib\snakeyaml-1.29.jar;%APP_HOME%\lib\httpmime-4.5.9.jar;%APP_HOME%\lib\google-http-client-xml-1.20.0.jar;%APP_HOME%\lib\google-http-client-1.20.0.jar;%APP_HOME%\lib\httpclient-4.5.9.jar;%APP_HOME%\lib\commons-logging-1.2.jar;%APP_HOME%\lib\jdom2-2.0.6.jar;%APP_HOME%\lib\protobuf-java-3.9.1.jar;%APP_HOME%\lib\jcommander-1.78.jar;%APP_HOME%\lib\httpcore-4.4.11.jar;%APP_HOME%\lib\re2j-1.3.jar;%APP_HOME%\lib\reflectasm-1.11.3.jar;%APP_HOME%\lib\minlog-1.3.0.jar;%APP_HOME%\lib\objenesis-2.5.1.jar;%APP_HOME%\lib\junit-4.13.1.jar;%APP_HOME%\lib\failureaccess-1.0.1.jar;%APP_HOME%\lib\listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar;%APP_HOME%\lib\checker-qual-2.11.1.jar;%APP_HOME%\lib\error_prone_annotations-2.3.4.jar;%APP_HOME%\lib\j2objc-annotations-1.3.jar;%APP_HOME%\lib\okhttp-3.7.0.jar;%APP_HOME%\lib\okio-1.12.0.jar;%APP_HOME%\lib\ome-jai-0.1.3.jar;%APP_HOME%\lib\jgoodies-common-1.7.0.jar;%APP_HOME%\lib\base-18.09.0.jar;%APP_HOME%\lib\commons-io-2.7.jar;%APP_HOME%\lib\commons-lang3-3.10.jar;%APP_HOME%\lib\xmpcore-6.1.11.jar;%APP_HOME%\lib\asm-5.0.4.jar;%APP_HOME%\lib\hamcrest-core-1.3.jar;%APP_HOME%\lib\ion-java-1.0.2.jar;%APP_HOME%\lib\xpp3-1.1.4c.jar;%APP_HOME%\lib\commons-codec-1.11.jar
 +set CLASSPATH=%APP_HOME%\lib\*
  
  
