Fix bugs #46
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| name: Nextflow test | |
| on: [push] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - run: df -h | |
| - name: "node-cleanup" | |
| run: | | |
| sudo rm -rf /usr/share/dotnet /usr/local/lib/android /opt/ghc /opt/hostedtoolcache/CodeQL | |
| sudo docker image prune --all --force | |
| sudo docker builder prune -a | |
| - run: df -h | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: 3.11 | |
| channels: conda-forge,bioconda,defaults | |
| channel-priority: true | |
| - uses: nf-core/setup-nextflow@v1 | |
| - name: Test Nextflow pipeline | |
| run: | | |
| set -x | |
| echo "UID=$UID, GID=$GID" | |
| bash test/run-tests.sh gh | |