1.3.3

SeqSender

Main tool: SeqSender

Public Database Submission Pipeline by CDC

Example commands

# Create test submission files with supplied Influenza data
docker run --rm -u $(id -u):$(id -g) -v ${PWD}:/data seqsender:1.3.3 seqsender.py test_data -bsng --organism FLU --submission_dir test_dir

# Create test submission files with supplied SARS-CoV-2 data
docker run --rm -u $(id -u):$(id -g) -v ${PWD}:/data seqsender:1.3.3 seqsender.py test_data -bsng --organism COV --submission_dir test_dir

View full seqsender help options: docker run --rm -u $(id -u):$(id -g) -v ${PWD}:/data seqsender:1.3.3 seqsender.py --help