v2.7.0-rc1

What's Changed

• Bump requests from 2.32.3 to 2.32.4 by @dependabot[bot] in #515
• Bump urllib3 from 2.4.0 to 2.5.0 by @dependabot[bot] in #516
• Bump pillow from 11.2.1 to 11.3.0 by @dependabot[bot] in #519
• Bump pypa/gh-action-pypi-publish from 1.2.2 to 1.13.0 in /.github/workflows by @dependabot[bot] in #521
• Replace prefixcommons usages with curies by @cthoyt in #472
• refactor documentation to include links to JSON schema by @sierra-moxon in #522
• Kgx doc updates with KG class in Biolink by @sierra-moxon in #523
• update bmt dependency by @sierra-moxon in #524
• Add Jelly RDF format support by @lapkinvladimir in #531
• add a skip to clean database by @sierra-moxon in #536
• Ralatsdc/add arangodb support by @sierra-moxon in #537
• Add ArangoDB support by @ralatsdc in #535
• Bump urllib3 from 2.6.2 to 2.6.3 by @dependabot[bot] in #532
• Bump virtualenv from 20.35.4 to 20.36.1 by @dependabot[bot] in #533
• Bump protobuf from 6.33.2 to 6.33.5 by @dependabot[bot] in #534
• Bump pygments from 2.19.2 to 2.20.0 by @dependabot[bot] in #538
• Bump pyjwt from 2.11.0 to 2.12.0 by @dependabot[bot] in #539
• Bump tornado from 6.5.4 to 6.5.5 by @dependabot[bot] in #540
• Smoxon/remove python 3.9 support, migrate to uv by @sierra-moxon in #541
• pin click to resolve kgx schema by @sierra-moxon in #542

New Contributors

• @cthoyt made their first contribution in #472
• @lapkinvladimir made their first contribution in #531
• @ralatsdc made their first contribution in #535

Full Changelog: v2.6.0...v2.7.0-rc1

v2.6.0

What's Changed

• hacky fix to let kgx transforrm obojson -> tsv || to enable synonym properties by default by @iQuxLE in #513
• Bump tornado from 6.4.2 to 6.5.1 by @dependabot[bot] in #514
• Adds duckdb source (assuming nodes and edges tables), plus tests by @kevinschaper in #520

Full Changelog: v2.5.1...v2.6.0

v2.5.1

What's Changed

• re-enable dynamic versioning by @kevinschaper in #512

Full Changelog: 2.5.0...v2.5.1

2.5.0

What's Changed

• Bump jinja2 from 3.1.3 to 3.1.5 by @dependabot in #503
• Checks if synonym val exists before access by @matentzn in #502
• Bump requests from 2.31.0 to 2.32.0 by @dependabot in #493
• Bump virtualenv from 20.25.1 to 20.26.6 by @dependabot in #504
• fix docs, refresh sphinx, regenerate index by @sierra-moxon in #507
• trapi source/sink stubs and transform docs by @sierra-moxon in #506
• refactor docs to all be in the same place by @sierra-moxon in #508
• fix link in documentation by @andrewsu in #510
• Preserve 'exactSynonym' when transforming OBOJSON to KGX TSV by @iQuxLE in #511

New Contributors

• @matentzn made their first contribution in #502
• @andrewsu made their first contribution in #510
• @iQuxLE made their first contribution in #511

Full Changelog: v2.4.2...2.5.0

v2.5.0-rc1

What's Changed

• Bump jinja2 from 3.1.3 to 3.1.5 by @dependabot in #503
• Checks if synonym val exists before access by @matentzn in #502
• Bump requests from 2.31.0 to 2.32.0 by @dependabot in #493
• Bump virtualenv from 20.25.1 to 20.26.6 by @dependabot in #504
• fix docs, refresh sphinx, regenerate index by @sierra-moxon in #507
• trapi source/sink stubs and transform docs by @sierra-moxon in #506

New Contributors

• @matentzn made their first contribution in #502

Full Changelog: v2.4.2...v2.5.0-rc1

v2.4.2

What's Changed

• Updated versions of packages by @hrshdhgd in #499

Full Changelog: v2.4.1...v2.4.2

v2.4.1

What's Changed

• add "parquet source" mapped to "GraphSource" to support parquet sink support by @sierra-moxon in #490
• Bump urllib3 from 2.1.0 to 2.2.2 by @dependabot in #494
• Bump certifi from 2023.11.17 to 2024.7.4 by @dependabot in #495
• Bump zipp from 3.17.0 to 3.19.1 by @dependabot in #496
• Bump setuptools from 69.0.2 to 70.0.0 by @dependabot in #497
• Update neo4j dependency version by @hrshdhgd in #498

Full Changelog: v2.4.0...v2.4.1

v2.4.0

What's Changed

• update bmt to 1.4.0 by @sierra-moxon in #489

Full Changelog: v2.3.3...v2.4.0

v2.3.3

What's Changed

• upgrade bmt to 1.3.0 by @sierra-moxon in #486
• Add Parquet sink support by @caufieldjh in #483
• Bump idna from 3.6 to 3.7 by @dependabot in #487
• Fixing KGX to support testing knowledge_level and agent_type by @sierra-moxon in #488

Full Changelog: v2.3.2...v2.3.3

v2.3.2

What's Changed

• update linkml, linkml-runtime, bmt, tests to take advantage of newer biolink model by @sierra-moxon in #485

Full Changelog: v2.3.1...v2.3.2