Skip to content

v0.1.6

Latest

Choose a tag to compare

@cafferychen777 cafferychen777 released this 11 Feb 21:26
· 7 commits to main since this release

What's Changed

New Features

  • Add rho_sparsity parameter to deconvolve function for L1 sparsity penalty control
  • Add preprocess option to deconvolve function
  • Add reproducibility support with random_state parameter
  • Add Stereo-seq platform guide

Bug Fixes

  • Fix normalization for sparse matrices in deconv
  • Handle empty inputs and validate graph coordinates
  • Handle sparse references and clamp k in KNN graph
  • Clamp k bounds and use clamped min_k in estimator
  • Correct Visium HD typical UMI/spot values based on published data

Improvements

  • Input validation and robustness fixes across modules
  • Validation, dtype fixes, and safe correlation handling
  • Performance and robustness improvements
  • Change lambda_spatial default to auto
  • Change license from GPL-3.0 to BSD-3-Clause

Documentation

  • Add comprehensive spatial deconvolution tutorial notebook
  • Add reference data quality guide
  • Clarify and standardize rho_sparsity scaling and docs
  • Document the impact of unknown cells in deconvolution
  • Revise and expand README with updated features and benchmarks
  • Add Zenodo DOI badge to README

Full Changelog: v0.1.3...v0.1.6