Skip to content

adding comment about pos after detecting color card #4

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
nfahlgren merged 1 commit into from
Jul 16, 2025
Merged

adding comment about pos after detecting color card #4

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
91 changes: 25 additions & 66 deletions index.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -20,9 +20,7 @@
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [],
"source": [
"%matplotlib widget\n",
Expand All @@ -40,9 +38,7 @@
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [],
"source": [
"# Input/output options\n",
Expand All @@ -59,9 +55,7 @@
{
"cell_type": "code",
"execution_count": 3,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [],
"source": [
"# Set debug to the global parameter \n",
Expand All @@ -75,9 +69,7 @@
{
"cell_type": "code",
"execution_count": 4,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -119,9 +111,7 @@
{
"cell_type": "code",
"execution_count": 5,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -157,9 +147,7 @@
{
"cell_type": "code",
"execution_count": 6,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -196,9 +184,7 @@
{
"cell_type": "code",
"execution_count": 15,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [],
"source": [
"#First, find the color card. You won't see any output of this function. \n",
Expand All @@ -209,9 +195,7 @@
{
"cell_type": "code",
"execution_count": 17,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [],
"source": [
"#Make a color card matrix \n",
Expand All @@ -222,9 +206,7 @@
{
"cell_type": "code",
"execution_count": 18,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [],
"source": [
"# Define the standard color card matrix, we know what the colors of those chips should be in a \"perfect\" image, so we will correct to those values\n",
Expand All @@ -236,17 +218,16 @@
" # pos = 0: bottom-left corner\n",
" # pos = 1: bottom-right corner\n",
" # pos = 2: top-right corner\n",
" # pos = 3: top-left corner\n",
" # pos = 3: top-left corner (or following pcv.transform.detect_color_card)\n",
" # Note, using pcv.transform.detect_color_card orders the color card mask and should always use `pos = 3`\n",
"\n",
"std_color_matrix = pcv.transform.std_color_matrix (pos=3)"
]
},
{
"cell_type": "code",
"execution_count": 19,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -285,9 +266,7 @@
{
"cell_type": "code",
"execution_count": 37,
"metadata": {
"trusted": false
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -330,9 +309,7 @@
{
"cell_type": "code",
"execution_count": 20,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [],
"source": [
"#If you want to save your color corrected image, do so here. Do NOT save over your raw image. \n",
Expand All @@ -344,9 +321,7 @@
{
"cell_type": "code",
"execution_count": 21,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -384,9 +359,7 @@
{
"cell_type": "code",
"execution_count": 22,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [],
"source": [
"#Threshold your image by choosing points in the plot that will separate the green plant pixels from everything else. \n",
Expand All @@ -398,9 +371,7 @@
{
"cell_type": "code",
"execution_count": 23,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -439,9 +410,7 @@
{
"cell_type": "code",
"execution_count": 24,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -487,9 +456,7 @@
{
"cell_type": "code",
"execution_count": 25,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -533,9 +500,7 @@
{
"cell_type": "code",
"execution_count": 26,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -580,8 +545,7 @@
"cell_type": "code",
"execution_count": 27,
"metadata": {
"scrolled": true,
"trusted": true
"scrolled": true
},
"outputs": [
{
Expand Down Expand Up @@ -629,9 +593,7 @@
{
"cell_type": "code",
"execution_count": 28,
"metadata": {
"trusted": true
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -730,8 +692,7 @@
"cell_type": "code",
"execution_count": 29,
"metadata": {
"scrolled": true,
"trusted": true
"scrolled": true
},
"outputs": [],
"source": [
Expand All @@ -754,9 +715,7 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"trusted": false
},
"metadata": {},
"outputs": [],
"source": []
}
Expand All @@ -777,7 +736,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.14"
"version": "3.11.12"
}
},
"nbformat": 4,
Expand Down