Bump the all-julia-packages group across 2 directories with 13 updates by dependabot[bot] · Pull Request #19 · kpobrien/JosephsonCircuits.jl

dependabot · 2026-01-13T08:51:47Z

Updates the requirements on JosephsonCircuits, Statistics, AxisKeys, Graphs, PrecompileTools, OrderedCollections, Symbolics, SymbolicUtils, DataStructures, KLU, Touchstone, StaticArrays and FFTW to permit the latest version.
Updates JosephsonCircuits to 0.4.20

Release notes

Sourced from JosephsonCircuits's releases.

v0.4.20

Full Changelog: v0.4.19...v0.4.20

Commits

8208047 increase version to 0.4.20
63cd7d0 update actions checkout
5df0c50 stop testing on pre until dictionary ordering is resolved
514b91b remove more doctests due to windows differences
f0a86df remove Symbolic doctests due to formatting differences between Julia versions
2bd6462 update for Symbolics.jl v7
5280ebd change mistaken DimensionMismatch to ArgumentError in diagcombine test
a21dd50 add tests for diagcombine and axis_to_modes
5120acf add tests for diagcombine and diagrepeat
ed4b5ed make add_modes function for multimode connections in solveS and connectS
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Updates Statistics to 1.11.1

Release notes

Sourced from Statistics's releases.

v1.11.1

Statistics v1.11.1

Diff since v1.11.0

Merged pull requests:

Make SparseArrays a weak dependency (#134) (@IanButterworth)

Recommend mean((x, y)) rather than middle((x, y)) (#147) (@nalimilan)

Revert "Prepare standalone package, step 2 (#128)" (#148) (@nalimilan)

Prevent overflow in mean(::AbstractRange) and relax type constraint. (#150) (@chunjiw)

Document MATLAB behavior in quantile docstring (#152) (@nalimilan)

Fix quantile with Date and DateTime (#153) (@nalimilan)

relax test for mapreduce_empty (#156) (@vtjnash)

Drop support for v1.9 in CI (#157) (@vtjnash)

CI: restore v1.9.4 to build matrix (#159) (@vtjnash)

Closed issues:

The quantile function can return incorrect results for integer arrays (Int8, Int16, Int32) (#119)

Commits

68869af Bump patch for version 1.11.1
89f5fc7 Create tagbot.yml
dc844db CI: restore v1.9.4 to build matrix (#159)
d0523ae relax test for mapreduce_empty (#156)
d1c1c42 Drop support for v1.9 in CI (#157)
bfc6326 Fix quantile with Date and DateTime (#153)
b8ea3d2 Prevent overflow in mean(::AbstractRange) and relax type constraint. (#150)
a88ae4f Document MATLAB behavior in quantile docstring (#152)
46290a0 Revert "Prepare standalone package, step 2 (#128)" (#148)
81a90af make SparseArrays a weak dependency (#134)
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Updates AxisKeys to 0.2.17

Release notes

Sourced from AxisKeys's releases.

v0.2.17

AxisKeys v0.2.17

Diff since v0.2.16

Merged pull requests:

add Interpolations support (#170) (@aplavin)

chores: julia 1.10, test/Project.toml, compatibility fixes (#171) (@aplavin)

Commits

11c2292 add Interpolations support (#170)
e19bd36 run CI on pre instead of nightly
2a24111 fix for Julia 1.12
8f018fa fix for newer NamedArrays
572efb1 switch to test/Project.toml, cleanup compat
acd8dbb minimum Julia version is 1.10
0feb78f bump version
6796a52 upd CI versions
654f9bd add 1.10 to CI
030ba98 fix findindex test
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Updates Graphs to 1.13.3

Release notes

Sourced from Graphs's releases.

v1.13.3

Graphs v1.13.3

Diff since v1.13.2

Merged pull requests:

Bump actions/checkout from 5 to 6 (#477) (@dependabot[bot])

Update GitHub workflows: remove CompatHelper, add Julia dependabot (#479) (@Krastanov-agent)

Bump actions/cache from 4 to 5 (#480) (@dependabot[bot])

Bump actions/upload-artifact from 5 to 6 (#481) (@dependabot[bot])

Optimization: iFUB algorithm for unweighted graph diameter (#482) (@LoveLow-Global)

Commits

1d94b7a Optimization: iFUB algorithm for unweighted graph diameter (#482)
e7e2e43 Bump actions/cache from 4 to 5 (#480)
325a2e9 Bump actions/upload-artifact from 5 to 6 (#481)
4176651 Update GitHub workflows: remove CompatHelper, add Julia dependabot (#479)
ccb9284 Bump actions/checkout from 5 to 6 (#477)
424f49e move formatting to GitHub Action (#476)
4c3efb6 bump version number
fe131f0 add old formatting commits to git blame ignore file (#474)
8da7820 start a git blame ignore revs file (#473)
ce861b5 Bump actions/github-script from 7 to 8 (#461)
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Updates PrecompileTools to 1.3.3

Release notes

Sourced from PrecompileTools's releases.

v1.3.3

PrecompileTools v1.3.3

Diff since v1.3.2

Merged pull requests:

Bump actions/checkout from 4 to 5 in the all-actions group (#66) (@dependabot[bot])

Fix Base.StaticData renaming (#67) (@yuyichao)

v1.3.3 (#68) (@timholy)

Closed issues:

world age and Julia 1.12 issue (#61)

Commits

542d964 v1.3.3 (#68)
4d4ba28 Fix Base.StaticData renaming (#67)
7821943 Bump actions/checkout from 4 to 5 in the all-actions group (#66)
990c356 Use latestworld-if-toplevel (#60)
6b5623a Hide @trace_compile workload behind eval (#57)
1c9a571 Version 1.3.1 (#56)
980071c Ensure compilation happens after logging starts (#53)
10d0a0f Add edge-invalidation tests and implementation (#52)
a26f75e Update documentation to latest SnoopCompile names (#43)
c76eea0 Update TagBot workflow (#54)
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Updates OrderedCollections to 1.8.1

Release notes

Sourced from OrderedCollections's releases.

v1.8.1

OrderedCollections v1.8.1

Diff since v1.8.0

Merged pull requests:

LittleDict constructor from AbstractDict (#150) (@timholy)

Commits

5ec1764 LittleDict constructor from AbstractDict (#150)
7b3daef CI: workaround TagBot issues
89107a6 Merge pull request #107 from JuliaCollections/zpc-little-set
b86ae08 Version bump
289ecb2 Version bump
ee2d90d Fix LittleSet constructors
ccf7637 Move constant defs to appease nightly parsing error
f997d62 Add LittleSet to docs
592abf1 remove @inline that 1.6 doesn't support
f7161a7 Merge branch 'master' into zpc-little-set
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Updates Symbolics to 7.5.0

Release notes

Sourced from Symbolics's releases.

v7.5.0

Symbolics v7.5.0

Diff since v7.4.1

Merged pull requests:

docs: Update constraint_satisfaction.md for SymbolicSMT v1.2 (#1735) (@ChrisRackauckas-Claude)

feat: handle LinearAlgebra.dot in linear_expansion (#1743) (@AayushSabharwal)

fix: fix malformed unsafe code in _linear_expansion (#1744) (@AayushSabharwal)

build: bump minor version (#1745) (@AayushSabharwal)

Closed issues:

Examples in docs for constraint satisfaction do not run (#1727)

Changelog

Sourced from Symbolics's changelog.

4.0.0

Symbolics.jl now supports the latest symbolic computing architecture backed by Metatheory.jl v1.2 and SymbolicUtils.jl v0.18 for generic term rewriting.

Support for automatic code optimization through Metatheory.jl EGraphs and SymbolicUtils's optimize function.

3.3.0

adds simplify_fractions which turns an expression into a single fraction and simplifies by dividing the numerator and denominator factors by appropriate GCDs

Use new fraction_iszero and fraction_isone functions from SymbolicUtils to implement iszero and isone respectively.

x / x etc. are no more simplified on construction, call simplify_fractions to simplify them.

Commits

9fb8fd3 Merge pull request #1745 from JuliaSymbolics/as/bump-version
907d7b1 build: bump minor version
1d62d0e Merge pull request #1744 from JuliaSymbolics/as/fix-unsafeness
3d8a855 fix: fix malformed unsafe code in _linear_expansion
8b604c6 Merge pull request #1743 from JuliaSymbolics/as/improve-linear-expansion
5e34925 fix: fix printing of non-standard Equations
8cf46d3 feat: handle LinearAlgebra.dot in linear_expansion
f14c83c Merge pull request #1735 from ChrisRackauckas-Claude/update-constraint-satisf...
f8c9b3a docs: Add runnable @example blocks for constraint satisfaction
710b457 Update docs/src/manual/constraint_satisfaction.md
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Updates SymbolicUtils to 4.11.0

Release notes

Sourced from SymbolicUtils's releases.

v4.11.0

SymbolicUtils v4.11.0

Diff since v4.10.1

Merged pull requests:

Return expr if optimization rule does not change the IR (#840) (@DhairyaLGandhi)

fix: fix bad getindex methods (#841) (@AayushSabharwal)

fix: handle Adjoint multiplication properly (#842) (@AayushSabharwal)

Closed issues:

dot product through x'y leads to several obscure errors (#838)

Commits

60816e3 build: bump minor version
5e26cfc Merge pull request #842 from JuliaSymbolics/as/fix-adjoint-mul
3a165d3 Merge pull request #840 from DhairyaLGandhi/dg/expr
32592b5 fix: handle Adjoint multiplication properly
6dcc9d5 Merge pull request #841 from JuliaSymbolics/as/fix-bad-getindex
5741da1 fix: fix bad getindex methods
b65020f chore: add some quick release paths
6313a7a chore: add dispatch fro applying mulitple rules
120c2b4 chore: return expr if rule is not applied
d4ef257 chore: merge
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Updates DataStructures to 0.19.3

Release notes

Sourced from DataStructures's releases.

v0.19.3

DataStructures v0.19.3

Diff since v0.19.2

Merged pull requests:

Don't require the element to be provided to percolate_down! and percolate_up! (#960) (@Drvi)

Changelog

Sourced from DataStructures's changelog.

[0.19.3]

Fixed

Reintroduce a method for percolate_up! percolate_down!JuliaCollections/DataStructures.jl#960

[0.19.2]

Added

percolate_up!, percolate_down! now use @propagate_inboundsJuliaCollections/DataStructures.jl#954

[0.19.1] - 2025-08-26

Fixed

Add newsz::Integer type annotation to sizehint!JuliaCollections/DataStructures.jl#945

Fix pop! with default for OrderedRobinDictJuliaCollections/DataStructures.jl#950

Fix deprecation of DisjointSets(xs...)JuliaCollections/DataStructures.jl#951

Other

JuliaCollections/DataStructures.jl#944

Bump actions/checkoutJuliaCollections/DataStructures.jl#947

Add docstrings to DefaultDictJuliaCollections/DataStructures.jl#948

[0.19.0] - 2025-07-31

Added

New Queue and Stack as separate types with enhanced documentation

Add empty!JuliaCollections/DataStructures.jl#932

Support for recursive DefaultDict creation

Add find_prefixes method to TrieJuliaCollections/DataStructures.jl#933

Improved constructors for CircularBuffer allowing initialization with an iterable and capacity

Add resize! method for CircularBuffer

JuliaCollections/DataStructures.jl#931

Changed

JuliaCollections/DataStructures.jl#874

DisjointSets renamed to DisjointSetJuliaCollections/DataStructures.jl#700

IntDisjointSets renamed to IntDisjointSetJuliaCollections/DataStructures.jl#700

PriorityQueue API updated to use standard Julia interfaces:

enqueue! → push!

dequeue! → popfirst!

dequeue_pair! → popfirst!

peek → first

... (truncated)

Commits

a6eba5a Don't require the element to be provided to percolate_down! and `percolate_...
c9961a9 Merge pull request #954 from Drvi/td-heap-boundchecks
35d87fe Merge pull request #959 from m-fila/disjointset_rename_docs
e1651ad v0.19.2
8f3241b Fix naming of DisjointSet in documentation and tests
292debd .
7fc3ca6 PR feedback
708eeae Improve bounds checks in heap operations
c86628e Merge pull request #953 from odow/od/v0.19.1
71775aa Merge pull request #951 from odow/od/fix-deprecation
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Updates KLU to 0.6.0

Release notes

Sourced from KLU's releases.

v0.6.0

KLU v0.6.0

Diff since v0.5.0

Added support for the check and `allowsingular keyword arguments to several functions.

Added documentation for some internal / non-public functions.

Merged pull requests:

Update docs. (#23) (@ViralBShah)

Update ci.yml to include Apple Silicon (#24) (@ViralBShah)

Commits

e03bc19 Update Project.toml
0d1ecda Actually commit before pushing :)
d9fcc3d Update ci.yml to include Apple Silicon (#24)
41327dd Update docs. (#23)
7c8757d Update README.md
fd8c0f2 Create CITATION.bib
5162d1f Update to latest SuiteSparse and auto-generate wrappers (#18)
aee5644 Merge pull request #22 from JuliaSparse/vs/ci
1fa1d9d Merge pull request #20 from JuliaSparse/dependabot/github_actions/actions/cac...
63ec798 Update ci.yml
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Updates Touchstone to 0.1.1

Release notes

Sourced from Touchstone's releases.

v0.1.1

Full Changelog: https://github.com/kpobrien/Touchstone.jl/commits/v0.1.1

Commits

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Updates StaticArrays to 1.9.16

Release notes

Sourced from StaticArrays's releases.

v1.9.16

StaticArrays v1.9.16

Diff since v1.9.15

Merged pull requests:

SOneTo subtypes AbstractOneTo (#1302) (@jishnub)

Bump actions/checkout from 4 to 5 (#1315) (@dependabot[bot])

force specialization of dims argument type where it may be Colon (#1318) (@nsajko)

Bump actions/checkout from 5 to 6 (#1324) (@dependabot[bot])

Compute inverse of Cholesky with a single solve (#1326) (@devmotion)

Make CI pass on Julia 1.12 (#1327) (@mateuszbaran)

Closed issues:

Avoid piracy (#1248)

getindex return type (#1319)

Bug/numerical instability in exp/_exp returning NaN (for at least Float32); not in sync with Base/LinearAlgebra (#1322)

Commits

58bf1e1 Compute inverse of Cholesky with a single solve (#1326)
2060415 Make CI pass on Julia 1.12 (#1327)
74f26f6 SOneTo subtypes AbstractOneTo (#1302)
0d68e03 Bump actions/checkout from 5 to 6 (#1324)
a9333fa force specialization of dims argument type where it may be Colon (#1318)
bb20cf4 Bump actions/checkout from 4 to 5 (#1315)
d579b96 Bump version from 1.9.14 to 1.9.15 (#1317)
acefbd3 Force inv(::Cholesky) to be symmetric (#1258)
e7c5e01 Bump version to 1.9.14 (#1311)
41353d2 fix: fix n-dimensional view into n-dimensional SArray with Any eltype (...
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Updates FFTW to 1.10.0

Release notes

Sourced from FFTW's releases.

v1.10.0

FFTW v1.10.0

Diff since v1.9.0

Merged pull requests:

Require Julia v1.10 (LTS) (#312) (@dlfivefifty)

Revert back to the standard form for ccall which supports LazyLibrary improvements (#318) (@vtjnash)

Bump actions/checkout from 4 to 5 (#320) (@dependabot[bot])

Fix Pkg bug with stdlibs (#321) (@vtjnash)

Add external links to the documentation and update Documenter compat (#322) (@kunzaatko)

Tag v1.10.0 (#325) (@vtjnash)

Closed issues:

FFTW.jl about twice as slow as C++ for sizes 17, 19, 23, 29, 31, 34, 37, etc (#145)

Commits

062fddb Tag v1.10.0 (#325)
4401d48 Revert back to the standard form for ccall which now supports LazyLibrary imp...
92ee1af Add external links to the documentation and update Documenter compat (#322)
7d0f38c Fix Pkg bug with stdlibs (#321)
57d77fb Require Julia v1.10 (LTS) (#312)
7b20cb5 Bump actions/checkout from 4 to 5 (#320)
dbcb5d2 Replace __init__ with OncePerProcess on supported Julia versions (#316)
cefd827 allow MKL_jll version 2025 (#314)
cd4f9b9 Bump codecov/codecov-action from 4 to 5 (#310)
b6f41d8 Improve inferrability (#308)
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Updates the requirements on [JosephsonCircuits](https://github.com/kpobrien/JosephsonCircuits.jl), [Statistics](https://github.com/JuliaStats/Statistics.jl), [AxisKeys](https://github.com/mcabbott/AxisKeys.jl), [Graphs](https://github.com/JuliaGraphs/Graphs.jl), [PrecompileTools](https://github.com/JuliaLang/PrecompileTools.jl), [OrderedCollections](https://github.com/JuliaCollections/OrderedCollections.jl), [Symbolics](https://github.com/JuliaSymbolics/Symbolics.jl), [SymbolicUtils](https://github.com/JuliaSymbolics/SymbolicUtils.jl), [DataStructures](https://github.com/JuliaCollections/DataStructures.jl), [KLU](https://github.com/JuliaSparse/KLU.jl), [Touchstone](https://github.com/kpobrien/Touchstone.jl), [StaticArrays](https://github.com/JuliaArrays/StaticArrays.jl) and [FFTW](https://github.com/JuliaMath/FFTW.jl) to permit the latest version. Updates `JosephsonCircuits` to 0.4.20 - [Release notes](https://github.com/kpobrien/JosephsonCircuits.jl/releases) - [Commits](v0.1.0...v0.4.20) Updates `Statistics` to 1.11.1 - [Release notes](https://github.com/JuliaStats/Statistics.jl/releases) - [Commits](JuliaStats/Statistics.jl@v1.4.0...v1.11.1) Updates `AxisKeys` to 0.2.17 - [Release notes](https://github.com/mcabbott/AxisKeys.jl/releases) - [Commits](mcabbott/AxisKeys.jl@v0.0.1...v0.2.17) Updates `Graphs` to 1.13.3 - [Release notes](https://github.com/JuliaGraphs/Graphs.jl/releases) - [Commits](JuliaGraphs/Graphs.jl@v0.10.0...v1.13.3) Updates `PrecompileTools` to 1.3.3 - [Release notes](https://github.com/JuliaLang/PrecompileTools.jl/releases) - [Commits](JuliaLang/PrecompileTools.jl@v1.0.0...v1.3.3) Updates `OrderedCollections` to 1.8.1 - [Release notes](https://github.com/JuliaCollections/OrderedCollections.jl/releases) - [Commits](JuliaCollections/OrderedCollections.jl@v0.1.0...v1.8.1) Updates `Symbolics` to 7.5.0 - [Release notes](https://github.com/JuliaSymbolics/Symbolics.jl/releases) - [Changelog](https://github.com/JuliaSymbolics/Symbolics.jl/blob/master/NEWS.md) - [Commits](JuliaSymbolics/Symbolics.jl@v0.1.0...v7.5.0) Updates `SymbolicUtils` to 4.11.0 - [Release notes](https://github.com/JuliaSymbolics/SymbolicUtils.jl/releases) - [Commits](JuliaSymbolics/SymbolicUtils.jl@v0.1.0...v4.11.0) Updates `DataStructures` to 0.19.3 - [Release notes](https://github.com/JuliaCollections/DataStructures.jl/releases) - [Changelog](https://github.com/JuliaCollections/DataStructures.jl/blob/master/CHANGELOG.md) - [Commits](JuliaCollections/DataStructures.jl@0.2.0...v0.19.3) Updates `KLU` to 0.6.0 - [Release notes](https://github.com/JuliaSparse/KLU.jl/releases) - [Commits](JuliaSparse/KLU.jl@v0.1.0...v0.6.0) Updates `Touchstone` to 0.1.1 - [Release notes](https://github.com/kpobrien/Touchstone.jl/releases) - [Commits](kpobrien/Touchstone.jl@v0.1.1...v0.1.1) Updates `StaticArrays` to 1.9.16 - [Release notes](https://github.com/JuliaArrays/StaticArrays.jl/releases) - [Commits](JuliaArrays/StaticArrays.jl@v0.0.1...v1.9.16) Updates `FFTW` to 1.10.0 - [Release notes](https://github.com/JuliaMath/FFTW.jl/releases) - [Commits](JuliaMath/FFTW.jl@v0.0.1...v1.10.0) --- updated-dependencies: - dependency-name: JosephsonCircuits dependency-version: 0.4.20 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: Statistics dependency-version: 1.11.1 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: AxisKeys dependency-version: 0.2.17 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: Graphs dependency-version: 1.13.3 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: PrecompileTools dependency-version: 1.3.3 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: OrderedCollections dependency-version: 1.8.1 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: Symbolics dependency-version: 7.5.0 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: SymbolicUtils dependency-version: 4.11.0 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: DataStructures dependency-version: 0.19.3 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: KLU dependency-version: 0.6.0 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: Touchstone dependency-version: 0.1.1 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: StaticArrays dependency-version: 1.9.16 dependency-type: direct:production dependency-group: all-julia-packages - dependency-name: FFTW dependency-version: 1.10.0 dependency-type: direct:production dependency-group: all-julia-packages ... Signed-off-by: dependabot[bot] <support@github.com>

codecov · 2026-01-13T09:09:08Z

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 99.01%. Comparing base (beaafd0) to head (a27da5a).
⚠️ Report is 4 commits behind head on main.

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@@           Coverage Diff           @@
##             main      #19   +/-   ##
=======================================
  Coverage   99.01%   99.01%           
=======================================
  Files          20       20           
  Lines        5375     5375           
=======================================
  Hits         5322     5322           
  Misses         53       53

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dependabot Bot added dependencies Pull requests that update a dependency file julia Pull requests that update julia code labels Jan 13, 2026

kpobrien added 2 commits January 13, 2026 09:00

Update Project.toml

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a27da5a

kpobrien merged commit 9b3229b into main Jan 13, 2026
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Bump the all-julia-packages group across 2 directories with 13 updates#19

Bump the all-julia-packages group across 2 directories with 13 updates#19
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dependabot Bot commented on behalf of github Jan 13, 2026

v0.4.20

v1.11.1

Statistics v1.11.1

v0.2.17

AxisKeys v0.2.17

v1.13.3

Graphs v1.13.3

v1.3.3

PrecompileTools v1.3.3

v1.8.1

OrderedCollections v1.8.1

v7.5.0

Symbolics v7.5.0

4.0.0

3.3.0

v4.11.0

SymbolicUtils v4.11.0

v0.19.3

DataStructures v0.19.3

[0.19.3]

Fixed

[0.19.2]

Added

[0.19.1] - 2025-08-26

Fixed

Other

[0.19.0] - 2025-07-31

Added

Changed

v0.6.0

KLU v0.6.0

v0.1.1

v1.9.16

StaticArrays v1.9.16

v1.10.0

FFTW v1.10.0

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