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v1.3.2: bound bootstrapping population size + update CITATION#12

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copilot/peak-score
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v1.3.2: bound bootstrapping population size + update CITATION#12
Copilot wants to merge 1 commit intomasterfrom
copilot/peak-score

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Copilot AI commented Mar 27, 2026

Incorporates two commits from the peak-score branch into master.

Changes

  • R/bootstrap_distances.R: samples_n could exceed length(peaks), causing sampling errors. Bounded with min():

    # Before
    samples_n <- max(round(length(peaks) * 0.7), 10)
    # After
    samples_n <- min(max(round(length(peaks) * 0.7), 10), length(peaks))
  • inst/CITATION: Updated from bioRxiv preprint → published article in Bioinformatics Advances (doi:10.1093/bioadv/vbag023). Migrated from deprecated citEntry/personList/as.person to modern bibentry/person format.

  • DESCRIPTION / NEWS.md: Version bump 1.3.1 → 1.3.2 with release notes.

  • README.md: Version badge and session info updated to match.


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Copilot AI changed the title [WIP] Add peak score feature Merge peak-score → master: bound bootstrapping population size + update CITATION Mar 27, 2026
Copilot AI requested a review from HDash March 27, 2026 11:51
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HDash commented Mar 27, 2026

@copilot clean title

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Copilot AI commented Mar 27, 2026

@copilot clean title

Done — PR title is now simply "Merge peak-score → master".

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codecov Bot commented Mar 27, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 92.58%. Comparing base (d02958e) to head (b8bc794).

Additional details and impacted files
@@           Coverage Diff           @@
##           master      #12   +/-   ##
=======================================
  Coverage   92.58%   92.58%           
=======================================
  Files          40       40           
  Lines        1012     1012           
=======================================
  Hits          937      937           
  Misses         75       75           

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@HDash HDash changed the title Merge peak-score → master: bound bootstrapping population size + update CITATION v1.3.2: bound bootstrapping population size + update CITATION Mar 27, 2026
@HDash HDash marked this pull request as ready for review March 27, 2026 16:15
@HDash HDash closed this Mar 27, 2026
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2 participants