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@HumanCellAtlas Human Cell Atlas

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    121 repositories

    • metadata-schema

      Public
      This repo is for the metadata schemas associated with the HCA
      Python
      •
      Apache License 2.0
      •31•70•86•10•Updated Apr 10, 2026Apr 10, 2026

    • fusillade

      Public
      Federated User Identity Login & Access Decision Engine
      aws-iamaccess-decision-engine
      aws-iamaccess-decision-engine
      Python
      •
      Other
      •1•8•33•71•Updated Feb 17, 2026Feb 17, 2026

    • logs

      Public
      Infrastructure for centralizing and indexing logs
      Python
      •
      MIT License
      •1•2•3•167•Updated Feb 16, 2026Feb 16, 2026

    • matrix-service

      Public
      DCP Expression Matrix Service
      Python
      •
      MIT License
      •3•12•31•336•Updated Feb 15, 2026Feb 15, 2026

    • ingest-validator-js

      Public
      Javascript validator for HCA metadata
      JavaScript
      •
      Apache License 2.0
      •5•3•1•42•Updated Feb 13, 2026Feb 13, 2026

    • schema-template-generator

      Public
      Interactive UI for generating metadata schema templates
      Python
      •1•3•8•90•Updated Feb 13, 2026Feb 13, 2026

    • dcp-cli

      Public
      DEPRECATED - HCA Data Coordination Platform Command Line Interface
      Python
      •
      MIT License
      •6•6•48•15•Updated Feb 13, 2026Feb 13, 2026

    • data-monitoring-dashboard

      Public
      Python
      •0•2•9•64•Updated Feb 13, 2026Feb 13, 2026

    • dcp-diag

      Public
      Development and operations diagnostic tools and libraries
      Python
      •
      MIT License
      •0•2•6•32•Updated Feb 13, 2026Feb 13, 2026

    • status-api

      Public
      Return build and application status badges
      Python
      •
      MIT License
      •0•0•0•22•Updated Feb 13, 2026Feb 13, 2026

    • data-store

      Public
      Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")
      hcaprod
      hcaprod
      Python
      •
      Other
      •6•41•212•95•Updated Feb 12, 2026Feb 12, 2026

    • metadata-migration

      Public
      Proof of concept library for migrating metadata.
      Python
      •
      MIT License
      •1•0•0•16•Updated Feb 12, 2026Feb 12, 2026

    • data-consumer-vignettes

      Public
      Simple walk-throughs of interacting with the DCP as a downstream data consumer.
      Jupyter Notebook
      •
      MIT License
      •4•17•25•110•Updated Feb 11, 2026Feb 11, 2026

    • dcp

      Public
      Data Coordination Platform manifest and integration tests.
      Python
      •0•3•115•21•Updated Feb 11, 2026Feb 11, 2026

    • dcplib

      Public
      A library of modules shared among multiple Data Coordination Platform components
      Python
      •
      MIT License
      •2•4•8•4•Updated Feb 11, 2026Feb 11, 2026

    • zentool

      Public
      CLI tool for working with ZenHub / GitHub / Google Sheets
      Python
      •
      MIT License
      •0•6•0•6•Updated Feb 2, 2026Feb 2, 2026

    • query-service

      Public
      Prototype implementation of the DCP Query Service, a metadata search engine for HCA
      sqlpostgresqlaurora
      sqlpostgresqlaurorajsonbhcadcpmetadata-searchhumancellatlas
      Python
      •
      MIT License
      •1•7•48•82•Updated Jan 30, 2026Jan 30, 2026

    • lira

      Public
      Notification listener for secondary analyses
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•0•36•Updated Jan 28, 2026Jan 28, 2026

    • secondary-analysis

      Public
      Secondary Analysis Service of the Human Cell Atlas Data Coordination Platform
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•124•151•Updated Jan 23, 2026Jan 23, 2026

    • ingest-node-accessioner

      Public
      Ingest accessioning component using node-js
      JavaScript
      •
      Apache License 2.0
      •0•0•0•13•Updated Jan 22, 2026Jan 22, 2026

    • metadata-schema-publisher

      Public
      Script for creating a repo of schemas in response to Github commits
      Python
      •2•1•0•37•Updated Jan 22, 2026Jan 22, 2026

    • metadata-spreadsheet-tools

      Public
      Tools for generating metadata spreadsheets
      Python
      •
      Apache License 2.0
      •0•0•1•9•Updated Jan 20, 2026Jan 20, 2026

    • sctools

      Public
      Utilities for large scale distributed single cell data processing
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•24•13•31•Updated Jan 20, 2026Jan 20, 2026

    • bronze

      Public
      A minimal alarm that reads data from Google Sheets and alerts people via Slack
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•1•6•Updated Jan 19, 2026Jan 19, 2026

    • connexion

      Public
      Swagger/OpenAPI First framework for Python on top of Flask with automatic endpoint validation & OAuth2 support
      Python
      •
      Other
      •782•0•0•13•Updated Jan 16, 2026Jan 16, 2026

    • falcon

      Public
      The workflow starter of secondary analysis service
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•36•Updated Jan 16, 2026Jan 16, 2026

    • upload-service

      Public
      DCP Ingestion File Upload Service
      Python
      •
      MIT License
      •3•4•26•230•Updated Jan 14, 2026Jan 14, 2026

    • ingest-fastq-validator

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•16•Updated Jan 13, 2026Jan 13, 2026

    • ingest-accessioner

      Public
      Scripts for Ingest Accessioning Service
      Python
      •
      Apache License 2.0
      •0•0•0•4•Updated Jan 11, 2026Jan 11, 2026

    • cloud-blobstore

      Public
      Simple API that abstracts out differences between the blobstores across different cloud providers.
      Python
      •
      MIT License
      •1•7•1•11•Updated Jan 11, 2026Jan 11, 2026
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