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SeuratObject 5.4.0

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@anashen anashen released this 11 Apr 19:58
v5.4.0
61b2d5c
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Learn about vigilant mode.

Changes:

  • Add setter method DefaultDimReduc<- to enable users to specify a default dimensional reduction for object interaction and visualization (#268)
  • Add option to specify assay in FetchData.Seurat (#278)
  • Update ability to create cropped FOVs from Visium V2 images via new internal method .CropVisiumV2 (#279, #289)
  • Update documentation for [ to specify that ordering of cells/features is not always preserved (#280)
  • Specify drop = FALSE in LayerData<-.StdAssay to preserve dimensions when setting layer to the requested cells (#269)
  • Add parameter droplevels.meta.data to subset.Seurat to allow users to drop unused factor levels in object-level metadata when subsetting (#286)
  • Fix bug in selecting the requested assay when retrieving HVF information for an object (#284)
  • Fix bug relating to error message handling in subset.Seurat (#265)
  • Fix call to defunct method FilterObjects in [[<- (#275)
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