v1.7

Fix malformed tag structure when raw tag and corrected tag share the same name. Thanks @PollyTikhonova report this issue.

v1.6

*fix a bug if gene_name or gene_id is empty in GTF, annotation may cause segmental fault

• PISA bin method is introduced.

v1.5

Check and label EXACT_MATCH for all cell barcode segments. Previous only check the first segment. Thanks to @lishuangshuang0616 report this bug.

v1.4

Update -anno-tags for PISA count to count and filter reads at same time.

v1.3

Enable strand sensitive mode for genetic variant annotation in default.

v1.2

Fix segment fault of PISA corr.

v1.1

• -psi, -flatten added for PISA anno;
• Add new tools gtf2bed and flatten

v1.0 pre-release

• New (expressed peak tag) EPT calling method added.
• annobed and mergebed methods added.
• New parameters added to anno , see usage for details.

v0.12

1. PISA count supports multithreads
2. PISA count supports BAM with spatial coordinates
3. PISA anno supports a new alignment type, antisense intron

v0.12b

• New designed parse tool, PISA parse2, now is released.
• Accepts unsorted GTF.